Template-based Modeling Results for YBIB_ECOLI

Submitted Primary Sequence

>Length 320
MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEEEEEECCEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF
45033002200313332330333002100220022301120000000002121312210100020013202312122131100100022123310000000000013010200100123211311021003102020222022012002313000000010011022002002302221001000200110232320100100123001200300231112000020231211011332020000233102101112311113201313213100200220122232101000000000000012021022012302422
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF
1	MUSTER	1o17D	0.223	0.969	2.691	threading_1	MN----INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPN---AIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPA--NAKYQLMGVFSKDHLDLLSKSAYELDNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPILIVNSAEDSAIKIVRAFLGKDHVAEFIKINTAVALFALDRVGDFREGYEYADHLI
2	SPARKS	1o17a	0.229	0.956	5.606	threading_2	MN----INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPN--AIDTAGGLG-----TVNVSTASAILLS-LVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANA--KYQLMGVFSKDHLDLLSKSAYELDNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPILIVNSAEDSAIKIVRAFLGKDHVAEFIKINTAVALFALDRVGDFREGYEYADHLI
3	PROSPECT2	1vquA	0.191	0.950	4.114	threading_3	TSWYLLLQQLIDG----ESLSRSQAAELQG-WLSEAVPPELSGAILTALNFKGVSADELTGAEVLQSQSKTNSP------FSIIDTCGTGS-STFNISTAVAFVAAAYGVPVAKHGNR--SSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNP--LRPTGQVVGLFTPKLLTTVAQALDNLGKQAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEVGVTPAPRGGDVQENAEILKAVLQGKGTQQDAVALNAALALQVAGAVPLHAQGVSVAKEIL
4	PPA-I	1kgzB	0.168	0.966	3.601	threading_4	-----THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDG-TNSINISTASAFVAASCGAKVAKHGNRSVLA--GSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARP--PKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSALQGGTPEENRDILARLLQGKGDHARQVAANVALLLKLFG-QDNLRHNAQLALETI
5	HHPRED-l	3qr9_A	0.206	0.972	5.581	threading_5	PSWPQILGRLTDN----RDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPVPD-DAVDVVGTGGDG-VNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPA--RPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARALAGGDAQANAAAVRAVLGGAGPVRDAVVLNAAGAIVAHGWLPAWEEGLRRASAA-
6	HHPRED-g	3qr9_A	0.205	0.975	4.757	threading_6	----PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPVPD-DAVDVVGTGGDGV-NTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNP--ARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARQLAGGDAQANAAAVRAVLGGAGPVRDAVVLNAAGAIVAHGWLPAWEEGLRRASAAI
7	SP3	2bpqa	0.198	0.978	5.880	threading_7	----PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTDDAVDVVGTGGDG-VNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARP--RAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARALAGGDAQANAAAVRAVLGGAGPVRDAVVLNAAGAIVAHAGLPAWEEGLRRASAAI
8	SAM-T99	2elcA	0.217	0.950	5.023	threading_8	----DAVKKAILG----EVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGK-GLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAY--VLGVFSPEWLAPMAEALERLGARGLVVHG-EGADELVLGENRVVEVGKGA----YALTPEEVGLKRAPKGGGPEENAALARRLLKGEGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVL
9	MUSTER	2elcA	0.210	0.953	2.640	threading_9	MD-------AVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRR-PLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPA--GADAYVLGVFSPEWLAPMAEALERLGARGLVVHG-EGADELVL-GENRVVEVGK---GAYALTPEEVGLKRALKGGGPEENAALARRLLKGEGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVL
10	SPARKS	2bpqa	0.194	0.981	5.593	threading_10	----PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDADVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNP--ARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARALAGGDAQANAAAVRAVLGGAGPVRDAVVLNAAGAIVAHAGLSSWEEGLRRASAAI

Predicted Tertiary Structure


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TM-score=0.928 to 1o17D SCOP code=a.46.2.1	TM-score=0.941 to 1kgzB SCOP code=a.46.2.1	TM-score=0.893 to 1o17D SCOP code=a.46.2.1	TM-score=0.854 to 2elcA SCOP code=a.46.2.1	TM-score=0.947 to 1kgzB SCOP code=a.46.2.1