Template-based Modeling Results for YBHO_ECOLI

Submitted Primary Sequence

>Length 413
MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP
CCCCEECCCEEEEECCHHHHHHHHHHHHHHHHCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCEECCHHHCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP
45121121120100220220020003001402310000000012120022002001200431120000010110230233002102401010000022121111211112211110000102000000000012101232331100000002020021012000210102122332244223233343313120000122233232000200020013132100000010001230020022003210201000113111100200021002100401010010233010010000121000000010011001010100000102300210131011102220120332112411202101100010001000100100122112123121212221212321323332245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP
1	MUSTER	3hsiB	0.156	0.913	1.946	threading_1	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHRAQEKSATNADWYCEQRQTYQLPDDPNFVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLHQFE-KYRYDRYQKITHAELADSVNFINDYLPLDVTNRPRTKEEYSLKSAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANYLYESNLRRFCEKFETQIVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQH-TKVLKYTELEELNQYPEPVQKLLKKFARIADKLVKIL---------------------------------
2	SPARKS	3hsia	0.142	0.920	5.130	threading_2	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHAQRNLLATNADWYCEQRQTYQLPDDPNFVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLHQFE-KYRYDRYQKITHAELANFINDYLLDFSAVYPLDVTNRPRYSLKSAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKPEQPFKAGALPYLYESNLRRGVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQ--QQLLAQVEKEQNQIQHTKVLKHYTELEELNQYPEPVQKLLKKFAR-------IKADKLVKIL----------------------
3	PROSPECT2	3hsiA	0.150	0.918	4.165	threading_3	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQPHLDVKVLIDWHRARNLLATNADWYCEQRQTYQLPDDPNFFPINTREVFGVLHVKGFVFDDTVLY-SGASINNVYLHQ-FEKYRYDRYQKITHAELADSVNFINDYLIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDPPEQPFKAGALPYLYESNLRRVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVK--------------------------------IL
4	PPA-I	3hsiB	0.156	0.915	4.010	threading_4	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHNLAEKSATNADWYCEQRQTYQLPDDPNFVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLHQFE-KYRYDRYQKITHAELADSVNFINDYLLDFSAVYPLDVTNRPRTKAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVAYESNLRRFCEKFETQIESGVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIADKLVKIL---------------------------------
5	HHPRED-l	3hsi_A	0.142	0.884	7.181	threading_5	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHNLL--NADYCEQRQTYQLPDDFFGV----PINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLHQFE-KYRYDRYQKITHAELADS-VNFINDYLLDFSAVYPLPRQGEYSLKSAKLPNVLSVSPFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKPEQPFK-AGALPYLYTQIESGVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQH-TKVLKHYTELQYPEPVQKLKKFARIKAKLVK-IL------------------------------------
6	HHPRED-g	3hsi_A	0.141	0.874	6.918	threading_6	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHNLL--AADYCEQRQTYQLPDDFFG----VPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLHQFE-KYRYDRYQKITHAELADS-VNFINDYLLDFSAVYDVPRAYLQNGESLKSAKLPNVLSVSPLFSGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKPEQPFK-AGALPYLYESIESGVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQH-TKVLKHYTELEYPEPVQLLKKADKLVK-IL----------------------------------------
7	SP3	3hsia	0.135	0.913	5.027	threading_7	LPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHAQRNLLATNADWYCEQRQTYQLPDDPNFVPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLH-QFEKYRYDRYQKITHAELANFINDYLLDFSAVYPLDVTNRPREYSLKSAVKLPNVLSVSPLGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKPEPYLYESNLRRFCEKFETQIVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQ--QQLLAQVEKEQNQIQHTKVLKHYTELEELNQYPEPVQKLLKKFAADKLV------KIL--------------------------
8	SAM-T99	1bysA	0.216	0.324	2.125	threading_8	-----------------------VLSAIDSAKTSIRMMAYSF----TAPDIMKALVAAKKRGVDVKIVIDERGNTGASIAAMNYIANSGIPLRTDSN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDR----------------------------------------------------------------WNQGRDYRS
9	MUSTER	2ze9A	0.171	0.847	1.140	threading_9	LEGSVTDGNRLDLLQTTRRLLDKMTRNIADARHTVDISSLAFPNGGFEDAVVDGLKASVAAGPRVRILVGAAPIYHVPSRYRDELIGKGAAAGKVTLNVASMTTSKTSLSWNASKLLVVDGKTAITGGINGWDDYLDTAHP--VSDVDMALSGPAARSAGKYLDTLWDWTCRNASDPAKEAGSAPAEPTGDVPVIAVGGDPSSGVNPEENALRSLIASARSHVEISQPLPRYDIRTYDTLAGKLAAGVKVRIVVSDPANRDEISDTLRTRLVALTGDNLQLASFKPYALHHKLVSVDDSAFYIGSKNLYPAWLQ---DFGYIVESPAAAQQLKTELLDPEWKYSQQAAATP-AGCP---------------------------------------------------------
10	SPARKS	1f0ia1	0.156	0.496	2.682	threading_10	LQTPGCWGDKCADRVGTKRLLAKMTENIGNATRTVDISTLAFPNGAFQDAIVAGLKESAAKGLKVRILVGAAPHMNIPSKYRDKLTAKLGKAAENITLNVAMTTSKTAFSWNHSKILVVDGQSALTGGINSWDDYLDTTHP--VSDVDLALTGPAAGSAGRYLDTLWTWTCKNK----SNIASVWFAASGNAGCMPTMHKDTNPKASPATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.643 to 1xdpA SCOP code=a.7.15.1	TM-score=0.637 to 1xdpA SCOP code=a.7.15.1	TM-score=0.627 to 1xdpA SCOP code=a.7.15.1	TM-score=0.646 to 1xdpA SCOP code=a.7.15.1	TM-score=0.644 to 1xdpA SCOP code=a.7.15.1