Template-based Modeling Results for YBHM_ECOLI

Submitted Primary Sequence

>Length 237
MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
554323323212111102000000000000000000001112110010021111100000001000000002101201010000000000000100000000000000000000000000001011022201201200001000000000010012231110000000000000000101210120023022332221010000000100000000000000000111123223224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
1	SPARKS	3sf5a	0.103	0.819	1.099	threading_1	LETYIQQTNKESALEYLKANQFLYTEMLSLKLTYESALQQD-------------LKKILGVEEVIMLSTSPMELRLANQKLGNRFIKTLQAMNELDMGEFFNAYAQKTKDPTHATSYGVFAAS-------------------LGIELKKALRHYLYAQTSNMVINCVKSV---PLSQNDGQKILLSLQSPFNQLIEKTLELD--------ESHLCTASVQNDIKAMQHESLYSRLYM
2	PROSPECT2	1r2fA	0.089	0.992	1.377	threading_2	ISAINWNKIQDDKDLEVRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRV--FTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVSYSSIFSTLAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALKAFLCYNANKALMNLG
3	PPA-I	3m1iC1	0.100	0.932	1.337	threading_3	MEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKN-SMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYET---------------
4	PROSPECT2	1kgna	0.082	0.983	1.348	threading_4	AINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRV--FTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESYSGFYLPMYLSSRAKLTNTADIIRLII--RDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYTEDVKRFLRYNS
5	PPA-I	3o7pA2	0.122	0.759	1.048	threading_5	LQSDNHSDAKQSLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPALCFAVIFIFARFRSQT---------------------------------------------------------
6	PROSPECT2	1h0oa	0.069	0.979	1.313	threading_6	NPSVEDVVFPIEYHDIWQMYKKAWTAEEVDLSKDIQHWEALKPDERHFISH---VLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLFNAIETMPCVKKKADWALRWIGDKEATYGEVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS--RDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLKLIGMNCTLMKQYIEFVADRLME
7	PPA-I	1xwmA	0.110	0.886	1.006	threading_7	------------------TFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQN-------ANLAMAVIDGDGSIDALEEEVNDFALWLIAQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHYDF--
8	PROSPECT2	2bkuB2	0.063	1.000	1.298	threading_8	MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNPVSITAVGFIADISNSLYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNTLEALDYQIKVLEAVLDAYVGIVAGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFYGQDWVIDYIKRTRSGQLFS
9	PROSPECT2	3a0oA3	0.091	0.979	1.282	threading_9	ERPVMPEPQPYVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRRAYNDEAGFRVVVALAWGYDEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQG-----ESDEAGEWLDYTVEFLATLYSPWHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPTLGDLPGLKLGYNVRQFAGVTHYQWYFDHIKADADDLVYRHDYPQVE
10	MUSTER	2x1gF	0.111	0.987	0.854	threading_10	WHEVPPEN-QKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEEVINTFQNQRSADVQLWIMLEVLTAIPEEAQVIHRVVLRAEIAKRVQLVIHTVERYLKLQM-AEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHMTADENELAESCLKTMVNI-IIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWEDIIVHIYMLFVSSVERHSTLLLSGITSADP

Predicted Tertiary Structure


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TM-score=0.483 to 1j30A SCOP code=a.25.1.1	TM-score=0.422 to 2fi2A SCOP code=a.28.3.2	TM-score=0.871 to 1uzrB SCOP code=a.25.1.2	TM-score=0.643 to 1wa5C SCOP code=a.118.1.1	TM-score=0.466 to 1c17M SCOP code=f.18.1.1