Template-based Modeling Results for YBHF_ECOLI

Submitted Primary Sequence

>Length 578
MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
CCCCEEEEEEEEEECCCCCCEEECCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
54221010210022032232100120002022010000001211010000100000021220201011111232121013100000331101330101000200030230213102300230031010121222212201200111000000000202000011001100120122002002202321100000001131032021000012010012121310042022210000022321330022025133022001222001010243220210122221321101222120220002112222223222111221131111200010220012113010014010202301000000111001000010000002112020001101033212201420010033110113010100020001012031310231023003101032112211330120011100000001120100001101110012002200200210153110000001102102101000001201000210131013202433322220120002002212433355
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
1	MUSTER	3bk7A	0.226	0.841	1.882	threading_1	FNASIVNLEDCVHRYG--VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNFRGNELQNYFERLKNGPVVKPQYVDLLPKAVKGK----VREL--LKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLVLDYLSDVIHVVYG----------------EPGVYGIFSKPKGTRNGINEFLQG-----------------------------------------------YLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------TVAYKPQYIKAEYEGTVYELLSKI----DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKEKTALVVEHDVLMIDYVDRLIVFE-GRALPPMGMREGMNRF-DPDSGRPRANKE--GSVKDREQKARGE
2	SPARKS	1yqta	0.208	0.832	4.779	threading_2	-------EEDCVHRYGVN---AFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNFRGNELQNYFEKLKNRPVVKPQYVDLIPKAVKGKVIELLKKA------DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYSDIIHVVYG----------------EPGVYGIFSQPKGTRNGINEFLRGYLKD-----------------------------------------------ENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID----ASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDVLIDYVSDRLVFEGEPGKYGRALPNRFLASIGITFRRDPDTGRPRANKEGSVKDREQKE
3	PROSPECT2	1yqtA	0.200	0.822	3.373	threading_3	EE-------DCVHRYGVN---AFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWAFRGNELQNYFEKPVVKPQYVDLIPKAVKGKVIELLKKADETG------KLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVDYLSDIIHVVYGE----------------PGVYGIFSQPKGTRNGINE-----------------------------------------------FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKLA-GVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKIDA----SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDVLIDYVSDRLVFEGEPGKYGRREGNRFLASIGITANKEGSVKD------REQKEKGEYA
4	PPA-I	1vplA	0.325	0.410	3.982	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFCDRIALIHNGTIVETGTVEELKERYKAQ-----NIEEVFEEVVK---------
5	HHPRED-l	3g5u_A	0.207	0.927	2.318	threading_5	NIQGNLEFKNIHFSYPSREVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTNVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED--VT----MDEIEKAVKEANAYDFIMKLVAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT----------EDVPPASFILSTEWPFGVFTNGPPERQSLKSMLRQDVSWFDDKNTMYAQSLQIRFGAYTQQEKTPEIDSYSLKPNMLEGNVQFSGVVFNYPTIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-------IYFSMVSVQ-----------
6	HHPRED-g	1yqt_A	0.236	0.813	1.864	threading_6	------E-EDCVHRYGVNAFV-LYRLP-VVKEG-VVGIVGPNGTGKSTAVKILAGQLIPNLCGIRAFGNELQNYFEKLKGEIRPVPQYVDLIPKAVKGKVIELLKK------ADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYSDIIHVVYGEPGVYG---------------IFSQPK-GTRNGINEFLRG------Y---------LK---------------DENVRFRPY----------------EI-KFTKTGERVEIERETLVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKIDA----SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL-EKEKTALVVEHDVL-IDVSDRL-VFEPGKYGRALPP---REG-NSTDTGRPNKEGS-VK---DREQKEKGE
7	SP3	1yqta	0.208	0.832	4.757	threading_7	-------EEDCVHRYGVN---AFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSGNELQNYFEKLKNGPVVKPQYVDLIPKAVKGKVIELLKKA------DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYSDIIHVVYGEPGV----------------YGIFSQPKGTRNGINEFLRG-----------------------------------------------YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKLA-GVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID----ASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDVLIDYVSDRLVFEGEPGKYGRALPPRFLASIGITFRRDPDTGRPRANKEGSVKDREQKE
8	SAM-T99	1vplA	0.325	0.410	2.928	threading_8	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFCDRIALIHNGTIVETGTVEELKERYK-----AQNIEEVFEEVVK---------
9	MUSTER	3ozxA	0.200	0.803	1.853	threading_9	--------GEVIHRYKVN---GFKLFGLPTKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-----DPNSKVGKDEVLKRFYNYFKELNELKIVHKIQYVEYASKFLILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLVLDYLTDLIHIIY-GES----------------------------------------------SVYGRVS--KSYAARVGINN--------------FLKGYL-------PAENMKIRPDEIKFMLKLKTKMKWTKIIKKLGDFQLVV-DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----------YKPQRIFPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTREKAVTFIIDHDLSIHDYIDRIIVFK-GEPEKAGLA-----------TSPVTLKTGMNEFLRELERRDAET
10	SPARKS	1vpla	0.325	0.410	4.203	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFCDRIALIHNGTIVETGTVEELKERYKAQ-----NIEEVFEEVVK---------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.565 to 1sgwA SCOP code=c.37.1.12	TM-score=0.573 to 1sgwA SCOP code=c.37.1.12	TM-score=0.558 to 1sgwA SCOP code=c.37.1.12	TM-score=0.545 to 1sgwA SCOP code=c.37.1.12	TM-score=0.701 to 1vplA SCOP code=c.37.1.12