Template-based Modeling Results for YBGP_ECOLI

Submitted Primary Sequence

>Length 242
MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAK
CHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCHHHHHHEEEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAK
22101000000000000000001022000003343310002011224411000000022342432312100011112023422110100122222423321110000002202223343333110100010102000102214332132032102112222101022322100000101124421222131110011120202022331120100001021012201010223141322438
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAK
1	MUSTER	3q48A	0.300	0.785	2.799	threading_1	----------------------IAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDELQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP-----------RFSFRSRFKLFFRPSQLKSV--DSAAGKLQWKFL-EVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWME--AASVRYEVINDYGGRNTHDRALG-----------
2	SPARKS	3q48a	0.300	0.785	5.457	threading_2	----------------------IAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDELQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP-----------RFSFRSRFKLFFRPSQLKS--VDSAAGKLQWK-FLEVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWME--AASVRYEVINDYGGRNTHDRALG-----------
3	PROSPECT2	1bf8_	0.338	0.843	3.537	threading_3	--------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVK-DGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAE-KLRFRRSANSLTLINPTPYYLTVTELNAGTRV----LENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPMTGVM-----------E
4	PPA-I	1ze3C	0.328	0.843	2.772	threading_4	--------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVK-DGRFIVTPPLFAMKGKKENTLRILDAT-NNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPP-DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRV----LENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTVME-----------
5	HHPRED-l	2co7_B	0.265	0.810	5.581	threading_5	---------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNY-PILVQSSVKAADK-SSPAPFLVMPPLFRLEANQQSQLRIVRTG--GDMPTDRETLQWVCIKAVPPE------TLDLNLSINACDKLIFRPDAVKGTPE-DVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPIT---GLEYVPPFADKTLN-----HGDIEWRVITDFGGEHPFHYVL------------
6	HHPRED-g	1klf_A	0.333	0.843	4.724	threading_6	--------------------GVALGATRVIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVK-DGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAA-EKLRFRRSANSLTLINPTPYYLTVTELNAGTRV----LENALVPPMGESTVKLPSDAGSNITYRTINDYGALPKMTGVME-----------
7	SP3	3q48a	0.300	0.785	5.275	threading_7	----------------------IAQGTRVVFPASEREVTLRVSNTSG-TPVLAQAWIDDGRQDVLQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP-----------RFSFRSRFKLFFRPSQLKS--VDSAAGKLQWK-FLEVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWME--AASVRYEVINDYGGRNTHDRALG-----------
8	SAM-T99	3dpaA	0.417	0.893	5.276	threading_8	--------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKA---NVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEGEFETVMLSPRSEQTVKSANY--NTPYLSYINDYGGRPVLSFICNGSRCSVKKEK-
9	MUSTER	1ze3C	0.333	0.843	2.766	threading_9	--------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVK-DGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQ-AAEKLRFRRSANSLTLINPTPYYLTVTELNAGT----RVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALPKMTGVME-----------
10	SPARKS	1qpxa	0.424	0.839	5.263	threading_10	--------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPI------------ALCTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEGEFETVMLSPRSEQTVKSANY--NTPYLSYINDYGGRPVLSFICNGSCSVK-----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.803 to 2co6B SCOP code=b.1.11.1	TM-score=0.904 to 1ze3C SCOP code=b.1.11.1	TM-score=0.792 to 1ze3C SCOP code=b.1.11.1	TM-score=0.718 to 1ze3C SCOP code=b.1.11.1	TM-score=0.899 to 1ze3C SCOP code=b.1.11.1