Template-based Modeling Results for YBGO_ECOLI

Submitted Primary Sequence

>Length 353
MSAGKGLLLVICLLFLPLKSAMALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAGKGLLLVICLLFLPLKSAMALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCEECCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCEEECCCCCEEECCEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAGKGLLLVICLLFLPLKSAMALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
44101000000000001120000000112433111121100210100120431210020220200000122131223210000000222222231000000010011211212120112201123313121133112101313202231231220100101010102123122332312111000010112211132221310100010031020010102010013221001020112303331121200020122333311310201000203321233020011120010201133122021122010010134212121101010121322313202010101020226
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSAGKGLLLVICLLFLPLKSAMALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
1	MUSTER	1klfP	0.102	0.776	1.229	threading_1	-----------------------FACKTANGTAIPIGGGSANYVNLAPVVNVGNLVVDLST---QIFCHNDYPETI-TDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTS----------ETPRVVYNSRTD------------------------KPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSA--RDVTVTLP--------DYPGSVPIPLTVYCAKS----QNLGYYLSGTTADSIFTNTASFSPAQGVGVQLTR-NGTIIPANNTVSLGAVGTSA--VSLGLTANYAR-TGGQVTAGNVQSIIGVTFVYQ
2	SPARKS	3jwne	0.153	0.408	2.757	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADSTIYVRDNGCSVAAESTNFTVDLMENAAKQFNNTTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNALLALENTVSAAAGLGIQLLNEQQNQIPLNAPSSSWTTLTPGKPNTLNFYARLMA-TQVPVTAGHINATATFTLEYQ
3	PROSPECT2	2w5nA	0.104	0.898	1.583	threading_3	AM--------------------------KPAGKTFSNVEIFDP---PTNYRDPQRPLELSDGTLLGTWENYSPEPPNVWFPIVKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKV-------VDDTKYADYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFPVYYRLSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGTRSEIFTNQALGDASAWKKWDVPQPTAYTRSLLTFQKDPDLLMIMGAGILPPAGGKNTVSASVVRLS
4	PPA-I	1klfP	0.084	0.779	1.587	threading_4	---------------------------------------------------------------FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTV----------TLPDYPGSVPIPLTVYCAKSQNLGYYLS-GTTADAGNSIFTNTASFSPAQGVGVQLTR-NGTIIPANNTVSL--GAVGTSAVSLGLTANYARTGG-QVTAGNVQSIIGVTFVYQ
5	HHPRED-l	3jwn_H	0.122	0.765	4.214	threading_5	-----------------------FACKTANGTGSANVYVNL-----APAVNVGQNL--VVDLSTQIFCHNDYPETI-TDYVTLQRGSAYGGVLSSFSGTVKYNGSSYPFPTTSE------------------------------TPRVVYNSRTDKPWPVA--LYLTPVS-SAGGVAIKAGSLAVLILRQTNNYN--SDDFQFVWNIYANNDVVVPTGGCDV--SARDVTVTLPDYPG--------SVPIPLTVYCAKS--QNLGYYLSGTTADANSIFTNTASFSPAQGVGVQLT-RNGTIIPANNTVSLGAVGT--SAVSLGLTANYARTG-GQVTAGNVQSIIGVTFVY-
6	HHPRED-g	3jwn_H	0.125	0.768	3.752	threading_6	-----------------------FACKTANG-TAIPIGGGSANVYVNPAVNVGQNL--VVDLSTQIFCHNDYPETI-----TDYVTLQRGGVLSSFSGTVKYNGSSYPFPTTSE----------TP-RVV-------------------YNSRTD--KPWPVALYLTPVSS-AGGVAIKAGLIAVLILRQTNNYN--SDDFQFVWNIYANNDVVVPTGGCDVS--ARDVTVTLPDYPG--------SVPIPLTVYCAKS--QNLGYYLSGTTADANSIFTNTASFSPAQGVGVQLT-RNGTIIPANNTVSLGAVGT--SAVSLGLTANYARTG-GQVTAGNVQSIIGVTFVYQ
7	SP3	3jwne	0.153	0.408	2.593	threading_7	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADSTITVRDNGCSVAAESTNFTVDLMENAAKQFGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNALLALENTVSAAAGLGIQLLNEQQNQIPLNAPSSSWTTLTPGKPNTLNFYARLMAT-QVPVTAGHINATATFTLEYQ
8	SAM-T99	2uy7B	0.210	0.405	1.459	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------QGKVTF-----------------------------------------------------NNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELN----CDGAKKGTVKLAFTGPIVNGSDELDTNGGTGTAIVVGAGKNVVFDGSEGDANTLKDGENV-LHYTAVVKKSSGAAVTEGAFSAVANFNLTYQ
9	MUSTER	2pyhB	0.084	0.949	0.934	threading_9	ASIQAAIDAAYAATVYLPAGEYRVS---AAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIDSVAHDNGLDGFVADYLVDSVFENVAYANDRHGFNVVTSTHDFVMTVAYGNGSRGLEDLALPSNILIDGG---AYYDNAREVLLKTSDITLQNADIHGNGSSGVRVYGAQDVQILDNDNAQAAAVPEVLLQSFDDTAGASGTYYTT----LNTRIE---GNTISGSANSTYGIQERNDGTDYSSLIDNDIAGVQQPIQYGP-HS----TVSGE
10	SPARKS	3jwng	0.113	0.399	2.492	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADVTITVNG----KVVAKPCTVS--TTNATVDLGDLYSFSLMSASAWHDVALELTNCPVGTS----RVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGA-TKTVQVDDSSQSAHFPLQVRALT-VNGGATQGTIQAVISITYTYS

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.800 to 1klfP SCOP code=b.2.3.2	TM-score=0.750 to 1klfP SCOP code=b.2.3.2	TM-score=0.551 to 1klfP SCOP code=b.2.3.2	TM-score=0.651 to 1w8nA SCOP code=b.1.18.2	TM-score=0.758 to 1klfP SCOP code=b.2.3.2