Template-based Modeling Results for YBGK_ECOLI

Submitted Primary Sequence

>Length 310
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN
CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCEEEEEECCCCCCEECCEECCCCCEEEECCCCEEEECCCCCCCEEEEEECCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN
2011121122000101122112211002100001000100010021323000010001102020221000000002030202212021011000220110102313310100000121030120010100013120111312203301101013132321323113312221101002022232023200110122202011212210010213213222333212210100102013311000001102212200100000100012013132222000010113201301220220022012313434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN
1	MUSTER	3oepA	0.347	0.874	2.996	threading_1	ALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIG----RPLWAGDVLGLEALRPVRPGRAFQRPLPEAFRLRLLPGPQ---FAGEAFRALCSGPFRVA-RADRVGVELLGPEV---PGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS----------------------------
2	SPARKS	3mmla	0.341	0.900	7.532	threading_2	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVGGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYD----VSAIGPSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVD--PDILVRTNWLVTNRSDRVG-RLVGPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
3	PROSPECT2	3mmlA	0.330	0.900	5.770	threading_3	GLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVGGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYD----VSAIGPSPLRPGDVLPVGEHTDEFDQAPVAAIAEDVVELQVVPGPRDDWFVDPDI--LVRTNWLVTNRSDRVGRLV-GPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYP-----------------------RR
4	PPA-I	3mmlA	0.330	0.900	6.623	threading_4	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVCGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYD----VSAIGPSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVDPDI--LVRTNWLVTNRSDRVGRLV-GPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
5	HHPRED-l	3mml_A	0.343	0.894	9.949	threading_5	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVCGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYDV-SAIG---PSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVDPILVRTN---WLVTNRSDRVG-RLVG-PLEYNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
6	HHPRED-g	3mml_A	0.343	0.894	8.393	threading_6	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVCGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYDV-SAIG---PSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVDPILVRTN---WLVTNRSDRVG-RLVG-PLEYNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
7	SP3	3mmla	0.341	0.900	7.864	threading_7	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVGGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYD----VSAIGPSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVD--PDILVRTNWLVTNRSDRVG-RLVGPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
8	SAM-T99	3mmlA	0.355	0.881	7.287	threading_8	-LEVLRTGPLALVEDLGRPG-LAHGVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVGGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYDV-SAIGP---SPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFV--DPDILVRTNWLVTNRSDRVG-RLVGPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHW----------------------------
9	MUSTER	3mmlA	0.330	0.900	2.940	threading_9	TLEVLRTGPLALVEDLGRPGLAH-GVTRSGAADRRSHTLANRLVANPGESATIEVTFGGFSARVCGDVAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRGGIDVTPVLGSRSYD----VSAIGPSPLRPGDVLPVGEHTDEFPELDQAPVAEDVVELQVVPGPRDDWFVDPDI--LVRTNWLVTNRSDRVGRLV-GPLEYRNPDRQLPSEGATRGAIQVPPNGFPVILGPDHPVTGGYPVIGVVTEEDIDKLGQVRPGQTVRLHWAYPRR-----------------------
10	SPARKS	3opfa	0.347	0.874	7.239	threading_10	ALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRI----GRPLWAGDVLGLEALRPVRPGRAFQRPLPEAFRLRLLPGPQ---FAGEAFRALCSGPFRVA-RADRVGVELLGPEV---PGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS----------------------------

Predicted Tertiary Structure


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TM-score=0.524 to 1x7fA SCOP code=b.62.1.2	TM-score=0.536 to 1x7fA SCOP code=b.62.1.2	TM-score=0.529 to 1x7fA SCOP code=b.62.1.2	TM-score=0.537 to 1x7fA SCOP code=b.62.1.2	TM-score=0.531 to 1x7fA SCOP code=b.62.1.2