Template-based Modeling Results for YBGI_ECOLI


  Submitted Primary Sequence

>Length 247
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
CCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
4403201310142012211231121000031442022000001002200220052201000000000121222113212321020002221000000011200131000010001010221231212111010222110210011012202230010032222201200001110320011013210100000202220020023210000000110012000210031025204110100213239
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
1MUSTER1nmpA1.0001.0003.239threading_1MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
2SPARKS1nmoa0.9840.9845.589threading_2-KNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGK-RNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVGEI-EPLVPWGELT-PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
3PROSPECT21nmoA0.9960.9844.465threading_3-KNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGK-RNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV-GEIEPLVPWGELT-PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
4PPA-I1nmpA1.0001.0003.618threading_4MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
5HHPRED-l1nmo_A1.0000.9806.132threading_5-KNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRG-KRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV-GEIEPLVPWGELT-PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNP-
6HHPRED-g1nmo_A1.0000.9845.507threading_6-KNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRG-KRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV-GEIEPLVPWGELT-PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
7SP31nmoa0.9960.9846.123threading_7-KNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGK-RNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV-GEIEPLVPWGELT-PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
8SAM-T991nmpA1.0001.0005.494threading_8MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
9MUSTER2yybA0.3640.9682.779threading_9MDRDELVRYLDAYLRIQDFQDPSLNGLQVEGKRTVRKVGAAVDAGEAIFRKALEEEVDFLIVHHGLFWGKPFPI-VGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARELGLVDLTPW-DVGVKGRFPQPTPLLQVADRLGQLTGMQPLVHQGG-LDHVETVILVSGSGTGLLP---KVDADLFVTGEPKHSVFHETFERGLNVIYAGHYDTETFGVKALAAHLEARFGLPWVFLDH--PT
10SPARKS2yyba0.3650.9765.292threading_10MDRDELVRYLDAYLRIQFPQDPSLNGLQVEGKRTVRKVGAAVDAGEAIFRKALEEEVDFLIVHHGLFWGKPFPI-VGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARELGLVDLTPW-DVGVKGRFPQPTPLLQVADRLGQLTGMQPLVHQG-GLDHVETVILVSGSGTGLLPKV---DADLFVTGEPKHSVFHETFERGLNVIYAGHYDTETFGVKALAAHLEARFGLPWVFLDHPTGL

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.999 to 1nmpA
TM-score=0.999 to native
SCOP code=c.135.1.1		 TM-score=0.999 to 1nmpA
TM-score=0.999 to native
SCOP code=c.135.1.1		 TM-score=0.993 to 1nmpA
TM-score=0.993 to native
SCOP code=c.135.1.1		 TM-score=0.996 to 1nmpA
TM-score=0.996 to native
SCOP code=c.135.1.1		 TM-score=0.999 to 1nmpA
TM-score=0.999 to native
SCOP code=c.135.1.1

  Experimental Structure

Download 1nmpA
SCOP code=c.135.1.1