Template-based Modeling Results for YBGF_ECOLI

Submitted Primary Sequence

>Length 263
MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAASTTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAASTTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAASTTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM
54342431110000000000000011302122212121321123023113212311120231122022103202221221222022113313311220122222122232221332122222122232222322222422212100200020023323232002002200431231220010001001001222313200200120043123123001000200100232221220130022003401213103201321333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAASTTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM
1	MUSTER	2xevA	0.367	0.456	1.365	threading_1	----------------------------------------------------------------------------------------------------------------------------------------------RTAYNVAFDALKN-GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI
2	PROSPECT2	2qfcA	0.079	0.916	1.650	threading_2	SENICHQSEVSMDILQGI---------AAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-------------LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNEISCRINSMALIGQLYYQRGECLRKLEYEAEIEDAYKKFFDILEMHAYKEALVNKISRL
3	MUSTER	3u4tA	0.103	0.920	1.184	threading_3	V-----EFRYADFLFK-YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT-----KAKSADFEYYGKILK-KGQDSLAIQQYQAAVDRDTTRLDYGQSYFYNKGNFPLAIQYEKQIRPTTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---YIGYLWRARANAAQDPDTKAKPYYEKLIEVCAPGDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK-----
4	SPARKS	2xeva	0.367	0.456	2.434	threading_4	----------------------------------------------------------------------------------------------------------------------------------------------RTAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI
5	PPA-I	2xevA	0.367	0.456	1.594	threading_5	----------------------------------------------------------------------------------------------------------------------------------------------RTAYNVAFDALKN-GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI
6	SP3	1kt0a	0.112	0.989	1.872	threading_6	MKRGEICHLCKPEYAYGSAGSLPKIPSKGEDLFEDGGIIRRTKRKYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDGIDKALEKMQQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKEDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNAARLQISMCQKKAKEH
7	HHPRED-g	2yhc_A	0.172	0.464	1.688	threading_7	--------------------------------------------------------------------------------------------------------------------------------------------PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL
8	MUSTER	2vq2A	0.114	0.798	1.117	threading_8	------------------------------------ANQVSNIKTQLAMEYMRG---DYRQATASIEDALKS--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI-CGRLNRPAESMAYFDKALADP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT-----
9	SP3	2xeva	0.367	0.456	2.334	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------RTAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI
10	SAM-T99	2hyzA	0.237	0.498	3.285	threading_10	------------------------------------------------------NLGNAYYKQGDYDEAIEYYQKALELDP----------------------------------------------------------RSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------------

Predicted Tertiary Structure


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TM-score=0.623 to 1elwA SCOP code=a.118.8.1	TM-score=0.605 to 1elwA SCOP code=a.118.8.1	TM-score=0.623 to 1elwA SCOP code=a.118.8.1	TM-score=0.639 to 1w3bA SCOP code=a.118.8.1	TM-score=0.607 to 1hz4A SCOP code=a.118.8.2