Template-based Modeling Results for YBGD_ECOLI

Submitted Primary Sequence

>Length 188
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEECCCCCEEEEEEEEEHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCEECCCCCCCCEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK
43201100000000000000010123220201020200211020214323120100200121034333232110102012021222332221201200000212242212200001222230200001011333120222222221201122231101000000112322301102010101020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK
1	MUSTER	2uy7B	0.252	0.824	2.568	threading_1	---------------------------QGKVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHSDEL----DTNGGTGTAIVVQGAGKNVVFDGSEGDAN--TLKDGENVLHYTAVVKKSAVGAAVTEGAFSAVANFNLTYQ
2	SPARKS	3jwne	0.272	0.803	4.032	threading_2	--------------------------ADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGTTPVVPFRILLSPCGNAVS---------AVKVGFTGVADSHNANLLALENTVSAAAGLGIQLLNEQQNQIPLNAPSSALSWTTPGKPNTLNFYARLMA--TQVPVTAGHINATATFTLEYQ
3	PROSPECT2	2j2zB	0.227	0.798	2.326	threading_3	-----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFNSQGGNLFSD-SRIRVTFDGVRGETPDK----FNLSGQAKGINLQIADVRGNIARAGKVMPAI--PLTGNEEALDYTLRIVR--NGKKLEAGNYFAVLGFRVDYE
4	PPA-I	2uy7B	0.252	0.824	2.478	threading_4	---------------------------QGKVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHSDELD----TNGGTGTAIVVQGAGKNVVFDGSEGDAN--TLKDGENVLHYTAVVKKSAVGAAVTEGAFSAVANFNLTYQ
5	HHPRED-l	2uy6_B	0.250	0.787	4.288	threading_5	-----------------------------KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGG----KGTVKLAFTGPIVNGHSDELDTN---GGTGL-AIVV-QGAGKNVVFDGSE-GDANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTY-
6	HHPRED-g	2uy6_B	0.250	0.787	4.183	threading_6	-----------------------------KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGG----KGTVKLAFTGPIVNGHSDELDTN---GGTGL-AIVV-QGAGKNVVFDGEGDAN--TLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwne	0.272	0.803	3.918	threading_7	--------------------------ADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGTTPVVPFRILLSPCGNAVS---------AVKVGFTGVADSHNANLLALENTVSAAAGLGIQLLNEQQNQIPLNAPSSALSWTTPGKPNTLNFYARLMA--TQVPVTAGHINATATFTLEYQ
8	SAM-T99	2jtyA	0.303	0.824	4.421	threading_8	---------------------AATTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLGQVRTASLAQGATSSAVGFNIQLNDCDTNVAS--------KAAVAFLGTADAGHTNVLALQSAAGSATNVGVQILDRTGAALTLDGATFSSETTLNNGTNTIPFQARYFATGA---ATPGAANADATFKVQY-
9	MUSTER	2j2zB	0.233	0.798	2.476	threading_9	-----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFN-SQGGNLFSDSRIRVTFDGVRGETPD----KFNLSGQAKGINLQIADVRGNIARAGKVMPA--IPLTGNEEALDYTLRIVRN--GKKLEAGNYFAVLGFRVDYE
10	SPARKS	2j2zb	0.233	0.798	3.654	threading_10	-----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFNSQ-GGNLFSDSRIRVTFDGVRGETPDKF----NLSGQAKGINLQIADVRGNIARAGKVMPAI--PLTGNEEALDYTLRIVR--NGKKLEAGNYFAVLGFRVDYE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.871 to 2uy7B SCOP code=b.2.3.2	TM-score=0.871 to 2uy7B SCOP code=b.2.3.2	TM-score=0.679 to 1klfP SCOP code=b.2.3.2	TM-score=0.839 to 2j2zB SCOP code=b.2.3.2	TM-score=0.871 to 2uy7B SCOP code=b.2.3.2