Template-based Modeling Results for YBFO_ECOLI


  Submitted Primary Sequence

>Length 477
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
CCCCCCCCEECCEEEEECCCCCEEEEEECCCCCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCEEECCEEEEEEECCCCCCEEEEEECCCCCEEEHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
523322222112110101331100111122232212123321210111232100111133323220201001112111001111323232212122223210010011111001122332212001212121000102123231010112122321111114311100011211211310212112332222111011212110111212232222222200000012211000001331211100011211212233323313221211011113320000021111012101000301111411110000010112100010011321213111111223322223223112003312231313322213211311132111221101023214321200132213221222320120023021212301311201101001312313021111012002000202232232244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
1SPARKS3jroa0.1160.8471.305threading_1-------------------------------------HNELIHDAVLDYYGKRLATCSSDKEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAIGVNSASWAPATTKESRKFVTGGADNL---VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLAL---SGGDNKVTLWK--------ENLEGKWEPAGEVHIDNAKLIKERRFTASYTFAKFSTGSLLTKDIVGKSGVSIKRLPTEL--QRKFLFDDVYLDKEIEKVTIEARKSNPYPSESSLLFKDAL--DYEKTSSDYNLWKLSS-ILFDPVSYPY--KTDNDQVKALLKKERHCRLTSWIVS
2PROSPECT21flga0.0760.9412.240threading_2DVLQYGMGTHAQRWSPLKQVNAPAWSYSFGDEKQRGQESQDGVIYVTASYSRLFALD---AKTGKRLWTYNHRLPDD-------IRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-------------GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYVGVDPSSGEVKWFYQHTPNDAWDFSGNNELAKDGKIVKATAHADRNGFFSNGKLQNAFPFVDNITWASHIDLKTGRPVER-----EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVHLPLWAGVLATAGNLVTGSGIVSPPTVGYGGAVPLWGGDMADLTRPVAQG
3HHPRED-l2fkj_A0.0790.5873.343threading_3DLPGEMKV---LVSKEKNKDGKYDLIATVDKLELKNNGSGVLEGVKADKSKVKLTISDDLG----QTTLEVFKEDGKTSEKKITRADK----------SSTEEKFNEKGELSEKKITDKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRAD----------------------------------------------------KSSTEEKFNEKGELSEKKITRADKSST-EEKFNEKGEVSEKIITRADGTRLEYTG---IKSDGSG---KAKEVLKGYVLEGTLTSAWNSGTSTLTITSKKDLVFTKENTITVQQYDSNGTK-----------------------------------------------------------------------------------------LEG----------------------SA-VEITKLDEIKNALK---------
4HHPRED-g2fkj_A0.0710.6505.646threading_4GTSDKNNGSGVLEGVKADKSKVKLTISDDLG---------QTTLEVFKEDGKTLKVTSKDKSS----TEEKFNEKGELSEKKIADKS------------STEEKFNEKGELSEKKITRADKTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSS-TEEKFNEKGLSEKKITRADKS-STEEKFNEKGEVSEKIITRADGTEYIKSDGSGKAKEVLKGYVLEGTLTAEKTT-LVVKEGTVTLSKNISKSGEVSVELND-----------------TDS-SAATKKTAAWNSGTSTLTITVNSKKTKVFTKENTITVQQYDSNGTKLEG-SAVEITKLDEIKNALK------------------------------------------------------------------------------------------------------------------------
5PROSPECT21xfdA0.0651.0002.224threading_5KIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLESLRAIRYEISPDREFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLEILKTHIAHWWSPDGTRLAAINDSRVPIMELPTYTGSIYPTVKPYHAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWAQNVSILTLCDATTGVTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHNDNIQSITSGTKILAYDEKGNTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTTNEHVKKAINDRQMPKVATFTDTVDGTPGSQSVAEKFEVSWEHEVRRRLILPAKGENQGQTFTKLYASAFSERYLGLHGLDNRAYEMTKVAHVSALEEQESHYFTSSSLKQHLYRSIINFFVECFRI
6HHPRED-l2fkj_A0.0910.5563.274threading_6NNGSGVL-----EGVKADKSKVKLTISDDLGQTTLTSKDKSSTEEKFNEKGELSEKKITRA--DKSSTEEKFNEKGELSEKKITRADKSSTEEFNTRADKSSTEEKFNEELSEKKIADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGKGYTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAAWNSGTSTLTITVNSKKTKDLVFTKENTI-TVQQYDSNGTKLEGSAVEITK------------------------------------------------------------LDEIKNALK------------------------------------------------------------------------------------------------------------------------------------------------
7HHPRED-g2fkj_A0.0810.7215.071threading_7DL-----PGEMKVSKEKNKDGKYDLIVDKLELKGTSNGSGVLEGVKADKSKVKLTISDDLGQ----TTLEVFKEDGKTLVSKSKDKSS------------TEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKRADKSSTEEKFNEKGELS-----------------------EKKITRADKS-STEEKFNEKGELSEKK-----ITRADKSSTEEKFNEKGELSEKKITRADKSST-EEKFNEKGEVSEKIITRADGTRLEYT---GIKSDG---SGKAKEV-LKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATK--------KTAAWNS-------------------------GTSTLTITVNSKK----TKDLVFTK------ENTITVQQYDSNGTKLEGSAVEITKLDEIK-----------------------NALK---------
8PROSPECT21kb0a20.1190.9332.143threading_8DWPTIGVDYAETRYSRLDQINALAWSYNLESTRGVEATPVDGIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF------------------KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAGKPRKVILHAPKNGFRTNGKFISAKNFVPVNWASGYDKHGKPIGI------AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKNGGTLTTAGNPTGTGVVAAPSWGGVYGLAARATERQGPGTE
9PROSPECT23kyaA0.0780.8602.125threading_9VETGAFDPSKPVAISDFTGAYQKLLIYGENFGTVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVSYEKKVVGTLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRLSSPLNINTIPTNRIRSIAFNKKI-----EGYADEAEYIVAIDYDGKGDESPSVYIIKR--------NADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP---TGKYAYFGVINNHYFRSDYDEIKKEFITPYNFVGGYKQSGYRDDV-------GTEARNNPCQGVFVKNPDYTGEEEYDTPEGIVSTYA-------------------GRGASTSLADGNQWGTDDGDLREVARFRDVSYDDVKESEQE-------------------------E
10PROSPECT22cn2A0.1020.9902.120threading_10VNETEKARADIGGAYRWDPSTETWIPLLDHFQDEYSYYGVESIATDPVDPNRVYIVAGYTNDWLPNGAILRSTDRGETWEKTILPFKGGNPGRSNPGTIIGVVWVVFDTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGLYITYGDGKGQVWKFNTRT-----GEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIVTSNAWWPDEYIFRSTDGGATNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEIDPFNSDRYVGGKVKIEVKATGISPPEGAPLVSAVGDLVGFVDDLKVGPKKHVPSYSSGTGIDYAELVPNFAVKKISFSYDGGRNWFQPPNEAPNSVGGGSVAVAADAKSVIWTPENASPAVTTDNGNSWKVCTNLGGAVVASDRVNGKKTDTKAPQLPKSVNKIKAVPGKEGHVKLSNVDTAHVVGFGKAAPGQDYAS

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.584 to 1rwiA
SCOP code=b.68.9.1
TM-score=0.650 to 1vyhT
SCOP code=b.69.4.1
TM-score=0.788 to 1flgA
SCOP code=b.70.1.1
TM-score=0.327 to 1h3iA
SCOP code=b.76.2.1
TM-score=0.528 to 1p4pA
SCOP code=b.76.1.1