Template-based Modeling Results for YBFM_ECOLI

Submitted Primary Sequence

>Length 468
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEECCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCEEEECCCCCCHHHCCEEEEEEEECCCEEECEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCEEEEEEHHHHHHHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
553221230000000000000000011221313111220201000000000112432232342421111001101021301102200000000000010122232222230111313312233212331211112000102012120200101120100001111101100200101010220201000011011232322222311311223322302100000020103320101000010110022000201020202312010001000022323331222211010000000001311200001010010212122111122111222122120000011113122421200000000103312010000000001011031121323231223333222101110101000231403101000000001122212211112122132221000001000113
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
1	MUSTER	3jtyA	0.142	0.825	2.681	threading_1	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKAQGKA---EEWTQSFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHD------GRPADNFGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKIAGLTLYGGQFRANSPRDDSSMSDMSMF----GKAAFTSDRFNFQGAEYAFNDKRQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG-----NTFYVGLQKLTGDSAWMRVNGTSGGTLANDS------YNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATVS-----------DGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSNN-----------EFDENRLIISYPLSL-
2	SPARKS	3jtya	0.140	0.825	7.947	threading_2	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKAQGKAEEWTQ---SFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHDGRPAD------NFGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKIAGLTLYGGQFRANSPRDDSSMSDMSM----FGKAAFTSDRFNFQGAEYAFNDKTQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG---NTFYVGLQKLTGDSAWMRVNGTSGGTLANDS--------YNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTAT-----------VSDGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSN-----------NEFDENRLIISYPLSL-
3	PROSPECT2	3jtyA	0.140	0.825	4.342	threading_3	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKAQGKAEEWTQSFI---LDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHDGRPAD------NFGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKIAGLTLYGGQFRANSPRDDSSMSDM----SMFGKAAFTSDRFNFQGAEYAFNKRTQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG---NTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYN--------ASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATVS-----------DGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSNN-----------EFDENRLIISYPLS-L
4	PPA-I	3jtyA	0.142	0.825	5.316	threading_4	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKAQGKAEEW---TQSFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHDGRPAD------NFGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSEIAGLTLYGGQFRANSPRDDSSMSDMSMF----GKAAFTSDRFNFQGAEYAFNDKRQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG---NTFYVGLQKLTGDSAWMRVNGTSGGTLAND--------SYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATVS-----------DGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSN-----------NEFDENRLIISYPLSL-
5	HHPRED-l	2odj_A	0.221	0.774	6.128	threading_5	------------------------FVSDQAEAKGFIEDSSLDLLLRNYYFNRDGK--------RVDWTQG---FLTTYESGFTQGTVGFGVDAFGYLGLKLDGT------------------------D-YSRAGGAVKVRISKT-LKWGE-QPTAPVFAAGGSRLFPQTATGFQLQSSFEGLDLEAGHFTE-----------ELYAT----YAGETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASQSLGFDFNIYRTNDEGKAKAGD--ISNTTWSLAAAYTLDA-H----TFTLAYQKVHGDQPF-DYIGFG---------SIFLVQYSDFNGPGEKSWQARYDLNLASYGVPGLTF-VRYINGKDIDGTK-SDNGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQ-------GE--GDQNEFRLIVDYPLSI-
6	HHPRED-g	3jty_A	0.137	0.825	5.229	threading_6	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKA---QGKAEEWTQSFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLD------HDGRPADNFGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSEIAGLTLYGGQFRANSPRDDSSMSDMSMFG----KAAFTSDRFNFQGAEYAFNDRTQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG---NTFYVGLQKLTGDSAWMRVNGTS--------GGTLANDSYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATV-----------SDGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFS-----------NNEFDENRLIISYPLSL-
7	SP3	3jtya	0.140	0.825	7.777	threading_7	---------------------------------GFLEDAQANLTLRNFYFNRNFTNPTKAQGKAEEWTQSFI---LDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHDGRPADN------FGRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSEIAGLTLYGGQFRANSPRDDSSMSDMSMF----GKAAFTSDRFNFQGAEYAFNDKTQIALWNAQLKDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGD--MENRTWSGLFSAKYGG---NTFYVGLQKLTGDSAWMRVNG--------TSGGTLANDSYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATVS-----------DGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSN-----------NEFDENRLIISYPLSL-
8	SAM-T99	2y0lA	0.152	0.774	5.733	threading_8	--------------------------------AGFLEDSKASLETRNFYMNRDFR----------KREEWAQGFILNLQSGYTQGTVGFGLDAMGMLGVKLDSPD------------------------TYSKLGLTAKVKVSQSELKVGTLIPKLPSVQPNNGRIFPQIFEGALLTSKEIKDLGFTAGRL--EKTKIDSEDLALNDKN-GRFAGVSADHFDLGGLDYKLTDQLTASYHYSNLQDVYRQHFVGLLHSWPIGPGELTSDLRFARSTDSGSAKAGG--IDNKSLNGMFTYSL-----GNHAFGAAWQRMNGDDAFPYL-------EGSNPYLVNFVQVNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRYVKGDNVELAGQG-----------EGREWERNTELQYVFQSGALKNLGIRWRNATFRSNFTR------------DIDENRLIVSYTLPIW
9	MUSTER	2y0lA	0.152	0.771	2.543	threading_9	--------------------------------AGFLEDSKASLETRNFYMNRDFRKR----------EEWAQGFILNLQSGYTQGTVGFGLDAMGMLGVKLDSPD------------------------TYSKLGLTAKVKVSQSELKVGTLIPKLPSVQPNNGRIFPQIFEGALLTSKIKDLGFTAGRLEKTKIDSEDLA----LNDKNGRFAGVSADHFDLGGLDYKLTDQLTASYHYSNLQDVYRQHFVGLLHSWPIGPGELTSDLRFARSTDSGSAKAGG--IDNKSLNGMFTYSLGN-----HAFGAAWQRMNGDDAFPYLE-------GSNPYLVNFVQVNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRYVKGDNVELAG-----------QGEGREWERNTELQYVFQSGALKNLGIRWRNATFRSNFT------------RDIDENRLIVSYTLPIW
10	SPARKS	2qtka	0.182	0.788	7.551	threading_10	---------------------------------GFLEDAKTDLVLRNYYFNRDFKS------LVDEWAQ---GFILKFSSGYTPGTVGVGLDAIGLFGVKLNNSELLPL----------------HAADNYGRVGVAAKLRVSASELKIGEMLPDIPLLRYDDGRLLPQTFRGFAVVSRLPGLALQAGRFDAVSLRNSADMQDLSAWSA----PTQKSDGFNYAGAEYRFNRETQLGLWHGQLEDVYRQSYANLLHKQRVGDWTLGANLGLFVDRDDGAARAGE--IDSHTVYGLFSAGIGL---HTFYLGLQKVGGDSGWQSVYGSSGRSMGND--------MFNGNFTNADERSWQVRYDYDFVGLGWPGLIGMVRYGHGSNATTKA-----------GSGGKEWERDVELGYTVQSGPLARLNVRLNHASNRRSFN------------SDFDQTRLVVSYPLSW-

Predicted Tertiary Structure


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TM-score=0.580 to 2fgrA SCOP code=f.4.3.1	TM-score=0.589 to 1h6s1 SCOP code=f.4.3.1	TM-score=0.578 to 1h6s1 SCOP code=f.4.3.1	TM-score=0.586 to 1phoA SCOP code=f.4.3.1	TM-score=0.585 to 1phoA SCOP code=f.4.3.1