Template-based Modeling Results for YBEM_ECOLI

Submitted Primary Sequence

>Length 262
MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCCEEEECCCCCEEEEEEECHHHHHHHHHHCCHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL
2100000011331132003100200120153301000001001022322121013022223130012012004403000000001323322000000002203000200000012021132232021133202002031010000000002001001000321010000000112231322000000000012110000000301121000000000101000203322100001001310220133011022232222223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL
1	MUSTER	2w1vA	0.264	0.985	3.584	threading_1	FRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGT--TYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFPDGSLLVKHRKIHLFDKITFQESKTLSPGDS-FSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL-TTGPAHWELLQRARAVDNQVYVATASPARDDAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVE
2	SPARKS	3p8ka	0.225	0.950	5.046	threading_2	HKVQIYQLPIVGDSSKNETQITQWFEKN-NAEVDVVVLPE-WNNGY--DLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNSGQLINEYDKVHLVP---LREHEFLTAGEYVAEPFQLSDGYVTQLICYDLRFPELLRYPARSGAKIAFYVAQW---PSRLQHWHSLLKARAIENN-FVIGTNSTGFDYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK--
3	PROSPECT2	2w1vA	0.267	0.985	4.977	threading_3	MRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTY--FPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCVFGPDGSLLVKHRKIHLFGKITFQESKTLSPGDSFS-TFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL-TTGPAHWELLQRARAVDNQVYVATASPARDDAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVE
4	PPA-I	2w1vA	0.260	0.985	6.213	threading_4	FRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTT--YFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFPDGSLLVKHRKIHLFGKITFQESKTLSPGD-SFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLT-TGPAHWELLQRARAVDNQVYVATASPARDDAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVE
5	HHPRED-l	1ems_A	0.298	0.985	4.067	threading_5	HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDIGLNKN-E-QIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDAAHPWNTHLIIDDGVTRAEYNKLHLFDLEILMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLN-TGLAHWETLLRARAIENQCYVVAAAQTGAHSYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYTL-
6	HHPRED-g	1ems_A	0.296	0.992	3.874	threading_6	HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGL-NKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDAAHPWNTHIIDSDGVTRAEYNKLHLFDLERLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTL-NTGLAHWETLLRARAIENQCYVVAAAQTGAQSYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYTLH
7	SP3	3p8ka	0.229	0.950	5.333	threading_7	HKVQIYQLPIVGDSSKNETQITQWFEKN-NAEVDVVVLPE-WNNGY--DLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVKSGQLINEYDKVHLVP---LREHEFLTAGEYVAEPFQLSGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQW---PSRLQHWHSLLKARAIENN-FVIGTNSTGFDYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK--
8	SAM-T99	1emsA1	0.300	0.981	5.165	threading_8	HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIG-LNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDAAHPWNTHLIIDDGVTRAEYNKLHLFDLEILMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGL-AHWETLLRARAIENQCYVVAAAQTGAHNYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLY---
9	MUSTER	1emsA1	0.304	0.981	3.442	threading_9	HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLN-KNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHPSDAAHPWNTHLIIDDGVTRAEYNKLHLFDKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTL-NTGLAHWETLLRARAIENQCYVVAAAQTGAHSYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLY---
10	SPARKS	1emsa2	0.298	0.962	4.668	threading_10	HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLA-MATDCEYMEKYRELARKHNIWLSLGGLHPSDAAHPWNTHLIISDGVTRAEYNKLHLFGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNT-GLAHWETLLRARAIENQCYVVAAAQTGAHSYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHR--------

Predicted Tertiary Structure


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TM-score=0.899 to 1f89A SCOP code=d.160.1.1	TM-score=0.902 to 1f89A SCOP code=d.160.1.1	TM-score=0.875 to 1j31A SCOP code=d.160.1.2	TM-score=0.901 to 1f89A SCOP code=d.160.1.1	TM-score=0.900 to 1f89A SCOP code=d.160.1.1