Template-based Modeling Results for YBDR_ECOLI

Submitted Primary Sequence

>Length 412
MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI
CEEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCEECCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI
2101001134201012032131442210001000000000000102031130431111011000101100341430340110001110001202003242200022111132222233222121011011111110110001001002020000201321221100000100000010022030341110000000000000000031120100000011320020013311111001333231021002212233000000100003132222210111132222103002200100241010000001122122010010012101020020102100220010033220313100001010310140021035333300000010123123022321212222132234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI
1	MUSTER	1kolA	0.352	0.903	3.013	threading_1	NRGVVYLGSGKVEVQKIDYPKMQDPRGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPA-----------RAGGAYGYVDM-GDWTGGQAEYVLVPYADFNLLKLPDRDKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFEIADLSLDTPLHEQIAALL-GEPEVDCAVDAVGFEARGHGHEGA-----KHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGVPK--KFVIDPHKTFSA------------------
2	SPARKS	1kola	0.352	0.903	4.051	threading_2	NRGVVYLGSGKVEVQKIDYPKMQDPRGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR-----------AGGAYGYVD-MGDWTGGQAEYVLVPYADFNLLKLPDRDKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFEIADLSLDTPLHEQIAALL-GEPEVDCAVDAVGFEARGHGHE-----GAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGV--PKKFVIDPHKTFSA------------------
3	PROSPECT2	2dphA	0.340	0.905	5.094	threading_3	NKSVVYHGTRDLRVETVPYPKLEHNNRVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNP-----------DADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD-AGFETIDLRNSAPLRDQIDQIL-GKPEVDCGVDAVGFEAHGL------GDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPSKVMNIEVITLDQAPDGYAKFD--KGSPAKFVIDPHGMLKNK-----------------
4	PPA-I	1kolA	0.352	0.903	4.016	threading_4	NRGVVYLGSGKVEVQKIDYPKMQDPRGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR-----------AGGAYGYVD-MGDWTGGQAEYVLVPYADFNLLKLPDRDKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFEIADLSLDTPLHEQIAALL-GEPEVDCAVDAVGFEARGHGHEGA-----KHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGVPK--KFVIDPHKTFSA------------------
5	HHPRED-l	1kol_A	0.341	0.903	2.409	threading_5	NRGVVYLGSGKVEVQKIDYPKMKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGY------------VDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKICLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALL-GEPEVDCAVDAVGFEARGHGHEGA-----KHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGV--PKKFVIDPHKTFSA------------------
6	HHPRED-g	1kol_A	0.352	0.903	2.441	threading_6	NRGVVYLGSGKVEVQKIDYPKMQDPHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARA-----------GGAYGYV-DMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA-QGFEIADLSLDT-PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGA-----KHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGVP--KKFVIDPHKTFSA------------------
7	SP3	1kola	0.347	0.903	3.951	threading_7	NRGVVYLGSGKVEVQKIDYPKMQDPRGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR-----------AGGAYGYVDMGD-WTGGQAEYVLVPYADFNLLKLPDRDKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTP--LHEQIAALLGEPEVDCAVDAVGFEARGHGHE-----GAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGV--PKKFVIDPHKTFSA------------------
8	SAM-T99	1kolA	0.352	0.903	3.900	threading_8	NRGVVYLGSGKVEVQKIDYPKMQDPHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARA-----------GGAYGYVDM-GDWTGGQAEYVLVPYADFNLLKLPDREKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFEIADLSLD-TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAK-----HEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGQVISLDDAPRGYGEFDAGV--PKKFVIDPHKTFSA------------------
9	MUSTER	2dphA	0.349	0.905	2.954	threading_9	NKSVVYHGTRDLRVETVPYPKLEHNNAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVN---------PDADLGAFGFD--LKGWSGGQAEYVLVPYADYMLLKFGDKEQIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-GFETIDLRNSAPLRDQIDQIL-GKPEVDCGVDAVGFEAHGLGDEA------NTETPNGALNSLFDVVRAGGAIGIPGIYVGSDLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPSKVMNIEVITLDQAPDGYAKFDKG--SPAKFVIDPHGMLKNK-----------------
10	SPARKS	1keva	0.252	0.837	3.805	threading_10	MKGFAMLGINKLGWIEKERPVA-GSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLA-------------------GWKFSNFKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGH--IVDQVMKLTNGKGVDRVIMAGGGSE--------------------TLSQAVSMVKPGGIISNINYHGSLIPRVEWGCG-MAHKTIKGGLCPGRLRAEMLRDMVVYNRVDLSKLVTHVYGFDHIEEALLLMKDKPKDLIKAVVIL------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.912 to 1kolA SCOP code=b.35.1.2	TM-score=0.915 to 1kolA SCOP code=b.35.1.2	TM-score=0.911 to 1kolA SCOP code=b.35.1.2	TM-score=0.899 to 1kolA SCOP code=b.35.1.2	TM-score=0.912 to 1kolA SCOP code=b.35.1.2