Template-based Modeling Results for YBDO_ECOLI

Submitted Primary Sequence

>Length 300
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
CCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
431132033000000100100132110120032021110000200220032131200010021121021022003202400310240023123331210010000200100001100200232122201001011223202210233300000001221242010010022200000024112123301021002130000002321231011103322231200010000000010023010000002000200232130200202230320200000051122110011012102321
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
1	MUSTER	2esnC	0.195	0.977	3.495	threading_1	---HPLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAP-GVRLRLVNAERKLSVEALASGRIDFALG-YDRLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHV--QHRDAHAWMIGQLKGLD
2	SPARKS	2esna	0.192	0.973	6.006	threading_2	LL-----RRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAP-GVRLRLVNAERKLSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
3	PROSPECT2	2esnA	0.195	0.977	4.869	threading_3	PL----LRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGWRPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAP-GVRLRLVNAERKLSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
4	PPA-I	2esnC	0.195	0.977	6.591	threading_4	---HPLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAP-GVRLRLVNAERKLSVEALASGRIDFALGY-DRLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHV--QHRDAHAWMIGQLKGLD
5	HHPRED-l	1uth_A	0.135	0.693	3.562	threading_5	-----------------------------------------------------------------------------------------TRNSFASTRTFNLAMTDIGEMYFMPPMEALAQRAPHIQIST--LRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVEL-
6	HHPRED-g	1uth_A	0.148	0.700	3.602	threading_6	-----------------------------------------------------------------------------------------SFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAP-HIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF
7	SP3	2esna	0.195	0.973	6.106	threading_7	L-----LRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAP-GVRLRLVNAERKLSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
8	SAM-T99	2esnC	0.199	0.957	5.948	threading_8	------LRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLWRFVPGQSQRTFVFAATDYTAFALLPPLMNLQHSAPGVRLRLV--NAERKLSVEALASGRIDFALGY--RLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHVQHRD--AHAWMIGQLKGL-
9	MUSTER	1utbB	0.149	0.737	2.395	threading_9	------------------------------------------------------------------------------YALNTLQTALTTFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAP-HIQISTLRPNAGNLSEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPERFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF
10	SPARKS	1utba	0.148	0.700	4.044	threading_10	-----------------------------------------------------------------------------------------SFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAP-HIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF

Predicted Tertiary Structure


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TM-score=0.907 to 2esnC SCOP code=a.4.5.37	TM-score=0.920 to 2esnC SCOP code=a.4.5.37	TM-score=0.827 to 2esnC SCOP code=a.4.5.37	TM-score=0.828 to 2esnC SCOP code=a.4.5.37	TM-score=0.942 to 2esnC SCOP code=a.4.5.37