Template-based Modeling Results for YBDN_ECOLI

Submitted Primary Sequence

>Length 406
MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND
5533323221301200220021003202100000110110000010002003412340100000230212101200210131012002201111121223211232223131233312112211330123231111132112122003201210233331000001223222210121122333222323211221322200100001202110000000222020021011013110213201113100230120021023121220100012010031000001221211023312414313022001000220133003201210010020025222312323323122310210120010012112003003112232311221231120122311210444
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND
1	MUSTER	2oq2C	0.165	0.599	1.092	threading_1	MKTYHLNNDIEQLITPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYM-PELLFIDTLHHFPQTLTLKNEIEKKYYQ------------PKNQTIHVYKPD---GCESEADFASKYGDFLWEKDD-----DKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSAR-------------SQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKE-GEDERAG----------RWKGKAKTECGIHEASRFAQFL----------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	3fwkA	0.172	0.616	1.358	threading_2	GAMQIAAESDSIIAQTQRAINTTKSINGEISFSYNGGKDCQVLLLLYLSCWEYYIVKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDR---------------------------------------------DKCETMAEAFETFLQVF--PETKAIVIGIRHTDPFGE------------HLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGF-------------------------------------------TSLGNVEETLPNPHLRKDKNSTPLKLNFE---------------------------WEIENRYKHNEVTKAEP---------------------------IPIADEDLVKIENLHEDYYPGWYLVDKKK
3	PROSPECT2	2fnaA	0.087	0.734	1.351	threading_3	LFDTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRKSSIIKIGINEL------NLPYIYLDEERNYISYKDFLLELQKEINKLVKRL-------------------------------PSLLKALKNIQGIVIGNEIKFNRLSFANLLESFEQASKDNVIIVLRGVNLLPALAYAYDNLKRYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRADIDFKDYEVVYEKIGG-------------------------IPGWLTYFGFIYL------------------------DNKNLDFAINQTLEYAKKLILKEFENFLEIARKRYLNIRTLSKCGK-----------WSDVKRALELEE------GIEISDSEIYNYLTQLTKHSISLA-----FS
4	PROSPECT2	1ct9a1	0.085	0.724	1.348	threading_4	RDYDAVKDNVTDKNELRQALEDSVKSHVPYGVLLSGGLDSSIISAITKKY-----ALHSFAVGLPGS---PDLKAAQEVANHLGTVHHEIH-------------------------------------------------FTVQEGLDAIRDVIYHIETY--------DVTTIRASTP---------------------------------MYLMSRKIKAMGIKSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQKMCKMEKHILRECFEAYLPAS--------------VAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG
5	SPARKS	1zuna	0.162	0.470	3.423	threading_5	GSHVDKLTHLKLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFP-VHVDTRWKFQE-YRFRDQVEEGLDLITH----------------------INSAKHTDIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSK----------------HRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	2oq2A	0.127	0.584	1.648	threading_6	MKTYHLNNDIIVTQEPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKL-SEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPK------NQTIHVYKPDGCESEADFASKYGDFLWEKDDDKY--------------DYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQ-------------LSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKE------------------------------------------------------------------------------------------GEDERAGRWTECGIHEASRF---------------------------------------------AQF
7	PPA-I	2oq2C	0.161	0.596	1.567	threading_7	MKTYHLNNDIIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYY-MPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFWEKDDDKYD---------------------YLAKVEPAHRAYKELHISAVFTGRRKSQGSAR-------------SQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGED-----------ERAGRWKGKAKTECGIHEASRFAQFL----------------------------------------------------------------------------------------------------------------------
8	HHPRED-l	1zun_A	0.203	0.436	4.931	threading_8	H-VDKLTH-LKQLEASIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFPV-HVDTRWKFQE-YRFRDQ--E--GLDLITHIN-----------------------------------------SAKHTDI-KTE----GLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-g	1zun_A	0.186	0.463	6.679	threading_9	SH-VDKLTHLKQLEASIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFPV-HVDTRWKFQE-YRFRDQ--E--GLDLITHIN-----------------SAKHTDI---KTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDS------------KHRW----DPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SP3	1zuna	0.168	0.470	3.557	threading_10	GSHVDKLTHLKLEAESIHIIREVAAEFDNPVL-YSIGKDSAV-LHLARKAFFPGKLPFP-VHVDTRWKFQE-YRFRDQVEEGLDLITH----------INSAKHTD------------IKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDS------------KHRW----DPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.555 to 1ni5A SCOP code=b.153.1.2	TM-score=0.511 to 1ni5A SCOP code=b.153.1.2	TM-score=0.561 to 1ni5A SCOP code=b.153.1.2	TM-score=0.682 to 2fnaA SCOP code=a.4.5.11	TM-score=0.752 to 1ct9A SCOP code=c.26.2.1