Template-based Modeling Results for YBDM_ECOLI

Submitted Primary Sequence

>Length 209
MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK
54331123112101210331233210300120210034013234221200010202201223211232223213201300232111100000223432010010111131021011122323220100002123321000001112233322221012003201322121320032021213101202312203310132312422224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK
1	MUSTER	1vz0B	0.170	0.732	1.746	threading_1	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRPQ-GDGYELVAGERRYRAALMAGL------QEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEGEITKGLSVR
2	SPARKS	1vz0a	0.170	0.732	3.610	threading_2	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRPQ-GDGYELVAGERRYRAALMAG------LQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAG
3	PROSPECT2	1vz0A	0.176	0.732	1.857	threading_3	VVR-------------------------------------------------LPLASIRPNPRQPRKRFAEELKELADSIREKGLLQPLLVRPQG-DGYELVAGERRYRAALMAG------LQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLLEALERGEITKGLSVR
4	PPA-I	1vz0B	0.170	0.732	2.376	threading_4	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRPQ-GDGYELVAGERRYRAALMAG------LQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAG
5	HHPRED-l	1vz0_A	0.164	0.727	5.374	threading_5	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRPQG-DGYELVAGERRYRAALMAGLQE------VPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALRGEITAGRAL-
6	HHPRED-g	1vz0_A	0.170	0.732	5.825	threading_6	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRPQ-GDGYELVAGERRYRAALMAGL------QEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAG
7	SP3	1vz0a	0.170	0.732	3.475	threading_7	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAESLKELADSIREKGLLQPLLVRP-QGDGYELVAGERRYRAALMAGL------QEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAG
8	SAM-T99	1vz0B	0.176	0.732	7.203	threading_8	-------------------------------------------------VVRLPLASIRPNPRQPRKRFAEELKELADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQE------VPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPEALERGEITAGHARA
9	MUSTER	1vk1A2	0.138	0.555	0.851	threading_9	----------------------------------------------------IPVKKVEYVDKMPHEQLVRELEDFIESVTGSGIWKPMLLAKIPTDEYLIVDGHHRWAGLQKLGA------KRAPSVILDYFDEGPTKEEVMELVKRGEVFSPTTRHVLPIPDKIDVKLEDLF-----------------------------------
10	SPARKS	1vk1a	0.142	0.742	1.661	threading_10	---------------------------------------IPVKKVEY---VFIELDKM------PHELVQRELEDFIESVTGSGIFKPMLLAIPGTDEYLIVDGHHRWAGLQKLGA------KRAPSVILDYFDEGVKDVNVIERLKAEGLEVIEDEKAEEAEGEIGLEEQKVSKVLDEMDQAEIELVYKEDAKADMEKGEIDRAPTKE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.629 to 1vz0B SCOP code=a.4.14.1	TM-score=0.657 to 1vz0B SCOP code=a.4.14.1	TM-score=0.665 to 1vz0B SCOP code=a.4.14.1	TM-score=0.575 to 1vz0B SCOP code=a.4.14.1	TM-score=0.627 to 1vz0B SCOP code=a.4.14.1