Template-based Modeling Results for YBDH_ECOLI

Submitted Primary Sequence

>Length 362
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESFKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESFKA
CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESFKA
55423111010001000221002101200242412200000033001100220030023220200002230122102100211232100000001010000010002302100000000011112101000001322210101113301100000030013013200100000000300100001232321210020011002101200120022001223223222001100100000000000001211200000000000110231230010010000000100122233002200100340302110230303232221012001300322310310222011310120022023245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESFKA
1	MUSTER	1kq3A	0.314	0.975	2.798	threading_1	MITT----TIFPGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESG----GLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGR
2	SPARKS	1kq3a	0.316	0.978	4.870	threading_2	---HMITTTIFPGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEAN----TLLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGR
3	PROSPECT2	3uhjA	0.277	0.956	4.161	threading_3	A-----RAFGGPNKYIQRAGEIDKLAAYLAPLG-KRALVLIDRVLFDALSERI-----SLDIRFERFGGECCTSEIERVRKVAIEGSDILVGVGGGKTADTAKIVAIDTGARIVIAPTIASTDAPCSAIAVRYTEHGVYEEALRLPRNPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNIDNYVAGGFPATEAGAIARHCQDVLTRDAVKAKIAVEAGLLTPAVENIIEA----NTLLSGLGFENCGCSAAHGIHDGLTVLEEVHGYFHGEKVAFGTLCLL-LENRDRAEIEAIRFCRSVGLPTKLADLGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAVRDAILALDAFSI
4	PPA-I	1kq3A	0.314	0.978	3.206	threading_4	---HMITTTIFPGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVT----PALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGR
5	HHPRED-l	1ta9_A	0.300	0.975	3.935	threading_5	FEESKDRIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTVFGGEASLVELDKLRKQCPDDTQVIIGVGGGKTMDSAKYIAHSMNLPSIICPTTASSDAATSSLSVIY----QFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVIRSNSTSGVASIAGRYIARACKDTLEKYALSAILSNTRGVCTEAFENVV----EANTLMSGLGFENGGLAAAHAIHNGMTAIHGPHRLMHGEKVAYGTLVQVVLEDPLEDFNNLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIKAVDSYS-
6	HHPRED-g	1ta9_A	0.302	0.978	3.951	threading_6	FEESKDRIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVLVFGGEASLVELDKLRKQCPDDTQVIIGVGGGKTMDSAKYIAHSMNLPSIICPTTASSDAATSSLSVIY----QFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVIRSNSTSFAGSIAGRYIARACKDTLEKYALSAILSNTRGVCTEAFENVVEA----NTLMSGLGFENGGLAAAHAIHNGMTAIGPVHRLMHGEKVAYGTLVQVVLEDWPEDFNNLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIKAVDSYSQ
7	SP3	1kq3a	0.320	0.975	4.734	threading_7	M----ITTTIFPGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYATGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANT----LLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGR
8	SAM-T99	1kq3A	0.316	0.978	4.518	threading_8	---HMITTTIFPGRYVQGAGAINILEEELSRF-GERAFVVIDDFVDKNLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYATGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANT----LLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGR
9	MUSTER	1jq5A	0.289	0.975	2.714	threading_9	---AAERVFISPAKYVQGKNVITKIANYLEGIG-NKTVVIADEIVWKIAGHTIVNELKKGNIEEVVFSGEASRNEVERIANIARKEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIKSGGKTMIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVT----PALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALGEIHHLTHGEKVAFGTLVQLALEHSQQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETIH-NAFNVTADDVADAIFAADQYAK
10	SPARKS	1ta9a	0.297	0.978	4.593	threading_10	FEESKDRIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVGEASLVELDKLRKQCPDDTQVIIGVGGGKTMDSAKYIAHSMNLPSIICPTTASSDAATSSLSVIYQFQK----YSFYPLNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVIRSNSTSFAGSIAGRYIARACKDTLEKYALSAILSNTRGVCTEAFENVVEAN----TLMSGLGFENGGLAAAHAIHNGMTAIHGVHRLMHGEKVAYGTLVQVVLEDPLEDFNNLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIKAVDSYSQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.966 to 1kq3A SCOP code=e.22.1.2	TM-score=0.968 to 1kq3A SCOP code=e.22.1.2	TM-score=0.968 to 1kq3A SCOP code=e.22.1.2	TM-score=0.917 to 1jq5A SCOP code=e.22.1.2	TM-score=0.972 to 1kq3A SCOP code=e.22.1.2