Template-based Modeling Results for YBCM_ECOLI

Submitted Primary Sequence

>Length 265
MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
CCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEECCCEEEEECCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
5544231202010010223231220311200000011021101134110102311000011112010111232210000001012300210131121133223322111221230110021012012321223011100100011101210121022223320111003003311224020220032011011001220232211031002101120022004222220210042011311120022014215101321242255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
1	MUSTER	3gbgA	0.154	0.955	2.562	threading_1	-----KKSFQTNVYRMSKFYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSDEINVSVITISDSFIRSLKSYI-----LGNKDLLLWNCEHNDIAVLSEVVNGFREIYSDEFLKVFFSGFFSKVEKKY--NSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
2	SPARKS	3gbga	0.154	0.955	3.674	threading_2	-----KKSFQTNVYRMSKFDTFNNLYINDYKMFWIDSGIAKLIDKLVSYEINSSSIILLKKNSIQRFSLTSSDENINVSVITISDSFIRSLKSY-----ILGNKDLLLWNCEHNDIAVLSEVVNGFRENYSDEFLKVFFSGFFSKV--EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
3	PROSPECT2	3gbgA	0.137	0.966	3.360	threading_3	---KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTLSDENINVSVITISDSFIRSLKSY-----ILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIF-ITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
4	PPA-I	3gbgA	0.157	0.962	2.853	threading_4	-----KKSFQTNVYRMSKFDTYNNLYINDYKMFWIDSGIAKLIDKLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYIL----GNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIF-ITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
5	HHPRED-l	3gbg_A	0.149	0.936	4.064	threading_5	-----KKSFQTNVYRMSKTYIFNNLYINDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLTSLDENINVSVITISDSFIRSLKSYILG--------LLLWNCEHNDIAVLSEVVNGFRENYSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLT-
6	HHPRED-g	3gbg_A	0.142	0.932	3.159	threading_6	---KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSSDENINVSVITISDSFIRSLKS---YILG----------NKDLLLCEHNDLSEVVRINYSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
7	SP3	3gbga	0.154	0.958	3.667	threading_7	-----KKSFQTNVYRMSKFDTFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSDEINVSVITISDSFIRSLKSY-----ILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFI-TDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
8	SAM-T99	3gbgA	0.134	0.872	2.650	threading_8	-----------------DTYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSSDENINVSVITISDSFIRSLKSYILGNKDLLL-WNCEHNDIAVLSEVVNGFREINYSD----------EFLKVFFSGFFSYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY------
9	MUSTER	2k9sA	0.219	0.396	1.146	threading_9	---------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAG-CE
10	SPARKS	2k9sa	0.210	0.396	1.911	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADNFDIASVAQHVCLSPSRLSHLFRQQGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE-

Predicted Tertiary Structure


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TM-score=0.502 to 1xjaC SCOP code=b.82.4.1	TM-score=0.498 to 1xjaC SCOP code=b.82.4.1	TM-score=0.487 to 1xjaC SCOP code=b.82.4.1	TM-score=0.498 to 1xjaC SCOP code=b.82.4.1	TM-score=0.488 to 1xjaC SCOP code=b.82.4.1