Template-based Modeling Results for YBCK_ECOLI

Submitted Primary Sequence

>Length 508
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCEEEEEECCCEEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
4210000001043232223113201310120044233201000000021211141332202101200200342212301000011012002220210120020023220100001222123232233212101000001102212311122022112312221132121111101210112333110001231030012002121352002100210232313222243221011000200212100000011121224222302120230013300200130232222223223332221102100001101110002223222200000213423413331032310121002201210231222322331232133202302220230120023233122013103302320330121132133322310220120122133023102200330011000123222020001111102112113212132012002122312122
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
1	PROSPECT2	1ezva	0.083	0.785	1.537	threading_1	AEVVATEH--------------------------NPAHTASVGVVFGSGAANENPYNNGVSNLKENSAVAAKEGLSRDFQSYIVSSLPGSTDKSLDFLNQSF--------------IQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTA------------FQNTPLSLPTRGTLESLENLVVADLESFANNHFLNIKHEDLVNSIESKNLSLQTGTKPVLKKKA-----AFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTM-------IDDLIHFTLKQWNRLTISVT------------DTEVERAKSLLKLQLGQLYESGNPVNDANLLGA------------EVLIKGSKLSLGEAFKKIDAIT--VKDVKAWAGKRLW-----DQDIAIAGTG---------QIEGLLDYMRIRSDM-----SMMRW
2	SPARKS	3guva	0.223	0.291	2.132	threading_2	I-KVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYND--YEIVGEYEDAGKSGKS--IEGRIQFNRMMEDIKSGKDG-VSFVLVFKLSRFARN-AADVLSTLQIMQDYGVNLICVEDGIDSSKDK-------LMISVLSAVAEIERENIRIQTMEGCIQKARE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3ripA	0.074	0.797	1.447	threading_3	MTWNKRSGLQVSQDFPFLHPSETSVIRFTEFIEQYT-----------------GHGGLHGIYLRAFCTGLDSLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKI------------------HGCQILETVYKHSVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGSLKQ-FSLRVEIVRVAEKILF----------VGESVQMFENNVNLTSILKNQEDTFAAELHRLK----------------------QQPLFSLVDFEQVDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDD------DNLLPLLHLTIEYHGASGWAALGLTPAVLEKAELQHCWALQQTDAIKWRLRNHMAFLVDNLQYLESQFSQLLHQINSTRDFESIRLALSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLLDERGAAQLLVKGFSR-----------------------------QSSLLFKILSSVRNHQINY
4	PPA-I	3guvA	0.215	0.293	1.828	threading_4	KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYND--YEIVGEYEDAGKSG--KSIEGRIQFNRMMEDIKSGK-DGVSFVLVFKLSRFARN-AADVLSTLQIMQDYGVNLICVEDGIDS-------SKDKLMISVLSAVAEIERENIRIQTMEGCIQKARE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1hr6b	0.100	0.766	1.402	threading_5	TSSATVGIFVSRAENVKNNGTAHPQQGIELEIENIGSHLNAYT---------------------------------SRENTVYYA--KSLQEDIPKAVDILSDILTK---------------SVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEIT------------YKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVDRAIGTGTNSPSPLAVAASQNG---SLANSYMSFSTSYADSGLWGMYI-----VTDSNEHNVRLIVNEILKEWKRIKSGKIS-----------DAEVNRAKAQLKA--ALLLSLDGSTAIVEDIGRQ------------VVTTGKRLSPEEVFEQVDKIT--KDDIIMWANYRLQ-----NKPVSMVALG---------NTSTVPNVSYIEEKLN--------Q
6	HHPRED-l	2r0q_C	0.168	0.374	4.516	threading_6	--MIIGYARVSSLDQ----NLERQLENLKTFG------AE--KIFTEK----------NRPILQKALNFVRMG-----DRFIVESIDRLGRN-YNEVIHTVNYLKDKEVQLMITSLPMMNEGNLLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYS--------PN----AKDPQKRVIYHRVVEMLEEGQAISKIAKEV-------------NITRQTVYRIKHDNG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1de4c	0.095	0.894	1.363	threading_7	LTDFTSTIKLLNENSYVPREDENLALYVENQFREFKLSKVWRDQHFPGGYVAYSKANFGTK------KDFEDLYTPVNGSIVIVRAGKITF-----AEKVANAESLNAIGVLIYMDQTKFPIVNAESRSSGLPNIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVKLTVSNVLKEIKIAKSGVGTALLLKLAQM-------FSDMVLKDGFQPSSAGDFGSVGATELSSLHLKAFTYIN-------LDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYGTTMDTYKELIERILNKVARAAAEVAGQFVIKLTYERYNSQLLSFVRDLNQYRADIKEGLSLQWLYSARGDFFRATSRLTTDFGNAEKTDRFVMKKLNDLKLRKQNNGAFNETLFRNQLALA-----------------------------TWTIQGAANALSGDVWDI
8	HHPRED-g	2r0q_C	0.179	0.374	3.966	threading_8	MI--IGYARVSSLDQ----NLERQLENLKTFG--------AEKIFTEK----------NRPILQKALNFVRMG-----DRFIVESIDRLGRNYNEV-IHTVNYLKDKEVQLMITSLPMNEVIGNLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEK----GVYKGR--PLLYSPN------AKDPQKRVIYHRVVEMLEEGQAISKIAKEV-------------NITRQTVYRIKHDNG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3guvA	0.216	0.291	0.864	threading_9	I-KVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYND--YEIVGEYEDAGKSG--KSIEGRIQFNRMMEDIKSGK-DGVSFVLVFKLSRFARN-AADVLSTLQIMQDYGVNLICVEDGIDS-------SKDKLMISVLSAVAEIERENIRIQTMEGCIQKARE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SP3	1gdta	0.188	0.356	2.441	threading_10	MR-LFGYARVSTSQQ----SLDIQVRALKDAG------VKANRIFTDKA----SGSSSDRKGLDLLRMK-----VEEGDVILVKKLDRLGRDT-ADMIQLIKEFDAQGVSIRFIDDGIST-----DGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGR------KRKI-----------------DRDAVLNMWQQGLGASHISKTMN-------------IARSTVYKVINN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.748 to 2ibzA SCOP code=d.185.1.1	TM-score=0.437 to 1gdtA SCOP code=a.4.1.2	TM-score=0.389 to 1lrzA SCOP code=a.2.7.4	TM-score=0.431 to 1gdtA SCOP code=a.4.1.2	TM-score=0.734 to 1hr6D SCOP code=d.185.1.1