Template-based Modeling Results for YBCH_ECOLI

Submitted Primary Sequence

>Length 296
MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPASGVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPASGVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY
CHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCHHCCEEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPASGVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY
42200000000000032222130000112222131122102100210332201100000011222112233420112002102320110000000123112223321200210022011001200211222111212000000100212121320020012002101320232222000000001131213002200320222101000110011330212001200200120224231000001000114342121223212200100232220142000000100211221234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPASGVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY
1	SPARKS	1cz1a	0.126	0.963	1.017	threading_1	MTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRWSTWEQDFKQISNLGLNFVRIPFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNYSDVVIGIELLNEPLGPVLN----MDKLKQFFLDGYNSLRQTGSVPVIIH---DAFQVFGYWNNFLT--VAEGQNVVVDHSGGELSRNINDHISVACNWGWDAKKESHWNVAGENRGARYEGAYDNAPYIGS--CQPLLDISQWSDEHKTDTRRYIEAQLDAFEY
2	PROSPECT2	1uuqA	0.098	0.929	1.481	threading_2	MWYAAYL---------------------GAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVLDYLLVELAKRDMTVVLYFNNFWAWIEGEPVQKSASFYRSEKAQQEYRKTLEKIITRVNSINGKAYMSWQLPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGSVNDMQVFIDAHATPDIDYLTYRNWSWFDKTWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRFELMLASLEQGEPSAGYNINGYGRTTRANYWW
3	PPA-I	1qnqA	0.103	0.922	1.043	threading_3	-------------ASSFVTISGTQFNICYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFLDYVVQSAEQHNLKLIIPFVNNVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANST--AIFAWELGNEPRCNGCSTDVIVQWATSVSQYVKSLDSNDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTFHLYPDSWGTNYTWGNGWIQTHAAACLAAGKPCVFEEYG-------AQQNPCTNEAPWQTTSLTTRGMGGDMFWQWGDT-FANGAQSN
4	HHPRED-l	1kwg_A	0.120	0.875	1.550	threading_4	--------------------MLGVCYYP----EHWPKERWKEDARRMREAGLSHVRIGWALLPGRLEW----GWLDEAIATLAAEGLKVVLGTATPPKWLVDRDREGRSSPVYREEARRIVTLLAERYGGLEAV--AGFQTDNEYGTVRCYCPRCQEAFRGWLEARYGTIEALN--EAWGTAFWSAEPNPSHLLDYYRAHAPGKFVTHNFMGFFTDLLPPEEVAAFHHDLY--RGVGGRF-WVMEQQPGPVNWAPHNPSPAPGMVRLWTWEALAHGAEVV-SYFRWRQAPFAQEQ-
5	HHPRED-g	1kwg_A	0.127	0.848	4.935	threading_5	------------------------MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWLDEAIATLAAEGLKVVLGTPTPPKWLVDRYPEILSSPVYREEARRIVTLLAERYGGLEAV--AGFQTDNEYGCHRCYCPRCQEAFRGWLEARYGTIEALNEA--WGTAFWS-----QRYRSFAEVELPHLT---------VAEPNPSHLLDYYRFASDQVAHAPGKFVTMEQQPGPVNWAPHNPSPAPGMVRLWTALAHGAE-VVSYFRW--RQAPFAQEQM
6	PROSPECT2	3civA	0.115	0.855	1.480	threading_6	E------------SAFDLGFIRGMTFGFVGQHGTWGTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGIASMAELAHALGLKVCLKPRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKR---TGCEMFCVGCEMTTAEPH--------EAMWRETIARVRTEYDGLVTYNCNHGREEHRDRVPVLREVAEAHEKPLFFMDYRHPGAVCLDEQARFYEAMFAAMPDEPWFGYMLWEWPWKLDGSYCIYGKPAEDVVAR--------------------AFSAIANR
7	HHPRED-l	2w61_A	0.154	0.855	1.273	threading_7	---------------GEQFFIKGIAYQL---DALADPKICLRDIPFLKMLGVNTLRV-YA-ID-----PTKSH--DICMEALSAEGMYVLLDLSEP-DIS-INRENPSWDVHIFER----YKSVIDAMSSFPNL--LGYFAGNQVTN-DHTNTFASPFVKAAIRDAKEYISHSNHRPVGYSTNDDAYSTTSGYRERTKEFEGYPIPVFFSEGCNLVPRPFTVSALYGNKMSSVW----SGGLAYMYFEEENNDGVDIL-PDFKNLKKEFAKAVECPHIAVGWNEK-LPETPDRCA-
8	HHPRED-g	1vem_A	0.130	0.909	2.544	threading_8	--------------AVNGKGMNKAYLAPKKIPEVTNWETFENDLRWAKQNGFYAITVDFW-WGDMEKNDQQFDYAQRFAQSVKNAGMKMIPSTCPIPSWVWNQDDSLYNRKEYAAAMKPYKDVIALRYPSYTTS--DGTGYPSRGKF-QAYTEFAKSKFRLWVLNKYGSLNEVNKA--WGTKLISELAIGSMYGKWHNAFDTTQVKVHWQYNNPT-IPHGAEKNDYSHLLDAFKSA--KLDVTFTCLEMDKGSY-PE-YSMPKTLVQNITLAEKGIVLNGENALIGN--EEEYKRV
9	PROSPECT2	7a3ha	0.082	0.828	1.427	threading_9	SVVEEH---------GQLSISNGELVNERGEQVQLWYGQFESMKWLRDDWGINVFRA-AMYTSSGGYIDDPSVKVKEAVEAAIDLDIYVIIDWHILSDNDPNIY---------KEEAKDFFDEMSELYGDYPNV---IYEIANEPNGSDVTWGNQIKPYAEEVIPIIRADNQLADPNVMYAFHFYAGTHGQNLRDQVDYALDQGAAIFVSAATGDGGVFLDEAQVWIDFMDE-----RNLSWANWSLTHKDESSAALMPGAGTFVREKIRES------------------------
10	HHPRED-g	3d3a_A	0.130	0.834	2.305	threading_10	-STFEVG-KNTFLLNGEPFVV----KAAEIHYPRIPKEYWEHRIK-CKALG-NTICLYVF-WNFHEPEEGRYDFIAAFCRLAQENG-YVIVRPGGLPWWLLKKKKLREQDPYY-ERVKLFLNEVGKQLADGGNI--I-VQVENEYGAF-GIDKPYISEIRD-VKQAFTGVPLFQCD--WNSNFENNALD--------DLLWTIN----FG--T---GANIDEQFKRL---KELRPDTPL-C--SEFFDHW-GAKH--ETRSAEELVKG----RNI-SFSLYTSFGHWGGANTCTSY

Predicted Tertiary Structure


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TM-score=0.689 to 1cz1A SCOP code=c.1.8.3	TM-score=0.724 to 1uz4A SCOP code=c.1.8.3	TM-score=0.815 to 1qnqA SCOP code=c.1.8.3	TM-score=0.605 to 1qnqA SCOP code=c.1.8.3	TM-score=0.560 to 1kwgA SCOP code=b.71.1.1