Template-based Modeling Results for YBBY_ECOLI

Submitted Primary Sequence

>Length 433
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
5532222230000001000010010000000001003023210110000000000000000000013100020000000000000000011211212100000000000000000000000002200310120000000000001001000200110111122221313011000000000000001111231001000000000000000001211222013010000101000100000000000000000010000020002113332223230320000100000001001001101111000002101211220000000000000000000300110021001000000000000000100220212221011000000000001101220032012002000210000000000001100234434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
1	MUSTER	3qe7A	0.168	0.921	3.118	threading_1	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HIN-------PATVLLFNGIGTLLYLFICGKIPAYLGSSFAFISPVLLLL------PLGYEVALGGFIMCGVLFCLVSFIVKKAG-TGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA----EGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIEVDYKAQNLILTSVILIIGVSGAKVNIGAAEL----------KGMALATIVGIGLSLIFKLIS--
2	SPARKS	3qe7a	0.182	0.915	5.197	threading_2	VSERPPLLQTIPLSLQHLFAMFGATVLVPVL----FHIN-------PATVLLFNGIGTLLYLFCKGKIPAYLGSSFAFISPVLLL----------LPLGYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA----EGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIEVDYNKQNLILTSVILIIGVSGAKVNIGAAEL----------KGMALATIVGIGLSLIFKLIS--
3	PROSPECT2	3qe7A	0.177	0.915	3.850	threading_3	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLFH-----------INPATVLLFNGIGTLLYLFIKGKIPAYLGSSFAFISPVLLLL----------PLGYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMA----GLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVKAQNLILTSVILIIGVSGAKVNIGAAE----------LKGMALATIVGIGLSLIFK--LIS
4	PPA-I	3qe7A	0.168	0.921	5.694	threading_4	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLFH-----------INPATVLLFNGIGTLLYLFICGKIPAYLGSSFAFISPVLLL------LPLGYEVALGGFIMCGVLFCLVSFIVKKAG-TGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA----EGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVKAQNLILTSVILIIGVSGAKVN----------IGAAELKGMALATIVGIGLSLIFKLIS--
5	HHPRED-l	3qe7_A	0.179	0.915	12.894	threading_5	VSERPPLLQTIPLSLQHLFAMFGATVLVPVL----FHINP-------ATVLLFNGIGTLLYLICKGKIPAYLGSSFAFISPVLLLLPL----------GYEVALGGFIMCGVLFCLVSFIVGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEG----QTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIKVDYNKQNLILTSVILIIGVSGAKVNI----------GAAELKGMALATIVGIGLSLIFKLIS--
6	HHPRED-g	3qe7_A	0.175	0.910	11.214	threading_6	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLICKGKIPAYLGSSFAFISPVLLLLPL----------GYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLPAE-GQ----TPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPT-LYPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIKVDYNAQNLILTSVILIIGVSGAKVNI---G-------AAELKGMALATIVGIGLSLIFKLIS--
7	SP3	3qe7a	0.177	0.915	1.575	threading_7	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HI-------NPATVLLFNGIGTLLYLFIKGKIPAYLGSSFAFISPVLLL----------LPLGYEVALGGFIMCGVLFCLVSFIVKKGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA----EGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIEVDYNKQNLILTSVILIIGVSGAKVN----------IGAAELKGMALATIVGIGLSLIFKLIS--
8	SAM-T99	3qe7A	0.182	0.903	8.698	threading_8	VSERPPLLQTIPLSLQHLFAMFGATVLVPVL----FHINP-------ATVLLFNGIGTLLYLICKGKIPAYLGSSFAFISPVLLLLPL----------GYEVALGGFIMCGVLFCLVSFI-GTGWLDVLFPPAAMGAIVAVIGLELAGVA-AGMAGLLPAE---GQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTNAHWFALP---TLYTP-RFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLSKVDYNKQNLILTSVILIIGVSGAKVN----------IGAAELKGMALATIVGIGLSLIFKLIS--
9	MUSTER	3qe7A1	0.187	0.483	1.194	threading_9	VSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HIN-------PATVLLFNGIGTLLYLFICKGIPAYLGSSFAFISPVLLL----------LPLGYEVALGGFIMCGVLFCLVSFIVKKA-------------------------------------------------------------------------------------------------------ALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCV----------------------------------------------------------------------------------------------------
10	SPARKS	1pw4a	0.077	0.903	0.945	threading_10	AAEIDPTYRRLRWQIFLGIFFGYAAYYNFALAMPYLGFSRGDLGFALSGISIAYGFSKFVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM-------GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD--------------------TPQSCGLPPIEEYKNDTAKQIFMQYVNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL-----------CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----AGTAAGFTGLFGYLGGSVAASAIVGYTVDFGVMIGGSILAVILLIVVMIGEK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.448 to 2q6hA SCOP code=f.54.1.1	TM-score=0.437 to 2q6hA SCOP code=f.54.1.1	TM-score=0.441 to 2q6hA SCOP code=f.54.1.1	TM-score=0.453 to 2q6hA SCOP code=f.54.1.1	TM-score=0.445 to 2q6hA SCOP code=f.54.1.1