Template-based Modeling Results for YBBO_ECOLI


  Submitted Primary Sequence

>Length 269
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
CCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
55332122122312310000000010001100100443102000001423102303321020010112123102300220032132100000000000000002202311022000010100010012001101422301000000010111110100100010002000200111033110200001011140301210132233322311110232222031002101200213212010002110100000120002300121134
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
1MUSTER1fduC0.3000.9412.208threading_1-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERV---TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRE
2SPARKS3m1aa0.2760.9292.252threading_2-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVADRAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTPGDPAKAAAAIRLALDTEKTPLRLALG--GDAVDFLTGH--LDSVRAELTE
3PROSPECT23klpX0.2920.9413.459threading_3-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEGSLETLQLDVRDSKSVAAARERV---TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHSPEEVLDFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG
4PPA-I3m1aA0.2600.9442.241threading_4-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAARAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENVGPTRQLVQGPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELTEWEKV
5HHPRED-l2bd0_A0.2250.8251.385threading_5--------------KHILLITGAGKGIGRAIALEFARAARHLVLSSRTAADLEKISAELTDTITADISDMADVRRLTTHIVERY-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM-----------QALMMMPEDIAAPVVQAYLQPSRTVVLPTSGDI---------------------
6HHPRED-g1jtv_A0.2930.9141.322threading_6-------------ARTVVLITGCSSGIGLHLAVRLASDPSQVYATLRDLKTQGRLWCGSLETLQLDVRDSKSVAAARERVT---EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT-------GSPEEVLDRSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG
7SP33m1aa0.2640.9442.297threading_7-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVADRAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSELTEWEKVSRG
8SAM-T991fduC0.2920.9411.819threading_8-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERVT---EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEHTFHRFYQYLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSGSNYVTAMH
9MUSTER3m1aA0.2690.9412.154threading_9-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAARAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENVGPTRQLVQGPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDS-LTEWEKVSRG
10SPARKS1fds_0.2890.9412.063threading_10-------------ARTVVLITGCSSGIGLHLAVRLASDPFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERVTE---GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTVLGSPEEVLDRTDIAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.902 to 1fduC
SCOP code=c.2.1.2
TM-score=0.855 to 1fduC
SCOP code=c.2.1.2
TM-score=0.801 to 2ag5A
SCOP code=c.2.1.2
TM-score=0.845 to 1fduC
SCOP code=c.2.1.2
TM-score=0.807 to 1ae1B
SCOP code=c.2.1.2