Template-based Modeling Results for YBBM_ECOLI

Submitted Primary Sequence

>Length 259
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK
CCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK
5420101110000000000000000111402122200100020000000000002000203110000000000000001102331322232100000000000000000010111131202100000000000001000000210033023112101110111021320012002200210000001102000001010110010011221120010000000000000000000000000120123321111121445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK
1	PROSPECT2	3kb9A	0.069	0.958	1.364	threading_1	GYYLGAPDEVLQAIADYSAWFFVWDDRHIVHGRAGAWRRLRGLLHTVAGFADSVRRLYAFLPATWNARFAVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVERDA-------LRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHEVDSWDDRSTP----PYVNN
2	PPA-I	3d31C	0.139	0.892	1.329	threading_2	-------PLTFVFSFLLLVLFLFIFLTLS-NMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVHTVAGIALLTVFGSRGLIGEPLESYILPGIVVAMLFVSMPYLANSAREGFKSDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF---GAVVILAYYPVGPTLIYDRFISSRPIAVLLILVTLSIFLVIR-----------------
3	HHPRED-g	3d31_C	0.111	0.873	1.423	threading_3	-----VFSFLLLVLFLFIFLTLSNMIFEQITE-------DFSGLVKAAGNRSVISSIFSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIVVPHTVAGIALLTVFGSRGLIGEQFRDALPGIVVAMLFVSMPYLANSAREGFKSVPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMARAISEFGAVVILAY----YPMVGPTLIYDRFISYGRPIAVLLILVTLSIFLVIR----------------
4	SP3	3tuia	0.173	0.803	1.086	threading_4	MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV-----GTSIGLQAAIVPLTVGA--------------------APFIARMVENALLEI-------------PTGLIEASRAMGATPMQIVRKLLPEA-----LPGLVNAATITLITLVGYSAGAVGAGGLGQIGYQYIYNATVMNTVLVLLVILVYLIQFAGDRIVRA-------VTR-
5	PROSPECT2	1ejlI	0.097	1.000	1.331	threading_5	VKGINSNNLESQLQATQAARKLLIDNIIRAGLIPKFVSPIQFESAWALTNIAAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLEVLADSCWAISYLTDGPNERIEMVVLLGATELPIVTEQTQKVIDAGALAVFPSLDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGQVILDAISNIFQAAEKLGETEKLSIMIEEC
6	PPA-I	2onkC	0.106	0.911	1.264	threading_6	--------MRLLFSALLALLSSIILLFVLLPVAATVTLQLFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPHTVAGIALLVVFGSSGLIGSFSPLKLPGIVVAMLFVSVPIYINQAKEGFASDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEF---GAVVVIAYYPMAPTLIYERYLSEAMPVAAILILLSLAVFVALRIIVG------------
7	SP3	2onkc	0.114	0.911	1.018	threading_7	--------MRLLFSALLALLSSIILLFVLLPVAATVTLQNFDEFLKAASDPAVWKVVLTYYAALISTLIAVIFGTPLAYILA-RKSFPGKSVVEGIVDLPHTVAGIALLVVFGSSGLFSPLKFVALPGIVVAMLFVSVPIYINQAKEGFASDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGIFGAVVVIAYMIAP-TLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG-------------
8	PROSPECT2	1ee4a	0.097	1.000	1.307	threading_8	TQQLNSDDMQEQLSATVKFRQILIDVVIQAGVVPRLVEAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAGPQEAIQAVIDVRIPKRLVEQTPALRAVGNIVTGNDLQTQVVINENIKKEACWTISNIEQIQAVIDANPLVKLLEVAEDKTKKEACWAISNASEVTLDALENILKMGEADKEARGLNINENADFIEKA
9	PPA-I	1t33A	0.101	0.842	1.238	threading_9	MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLT-------QEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWP--------QFDEEKAELIYQTVTCHIDLILHGLTQ--------------------------
10	PROSPECT2	1ezfa	0.076	0.965	1.297	threading_10	LD----GEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWYVKKLGDFAKPENIDLAVQCLNELITNALITYLSRLRNQSVFNFC-----AIPQVMAIATLAACYMPAVKAIIYQYMEEIYHRIPDSDQIISTIRTQN

Predicted Tertiary Structure


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TM-score=0.713 to 1hm7B SCOP code=a.128.1.4	TM-score=0.827 to 3d31C SCOP code=f.58.1.1	TM-score=0.796 to 3d31C SCOP code=f.58.1.1	TM-score=0.785 to 3dhwA SCOP code=f.58.1.1	TM-score=0.555 to 1xqrA SCOP code=a.118.1.21