Template-based Modeling Results for YBBL_ECOLI

Submitted Primary Sequence

>Length 225
MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA
CCCCCCEEEEEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCCEEEECCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA
554422101021000202302002201020330100000011110100001000102212301000211101213232142300000100000101011001000213333331200210032020232123221220221121101001203221200001100110132003201310330044140000000112310320110000122201123032225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA
1	MUSTER	1z47A1	0.311	0.973	3.833	threading_1	---GSMTIEFVGVEKIYGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHTVYDNVSFGLREKRVPEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDEEALEVADRVLVLHEGNVEQFGTPEEVG
2	SPARKS	1z47a	0.311	0.973	4.212	threading_2	---GSMTIEFVGVEKIYGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK--RNVGLVFQNYALFQHTVYDNVSFGLREKRVPEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDEEALEVADRVLVLHEGNVEQFGTPEEVY
3	PROSPECT2	1g2912	0.275	0.969	4.810	threading_3	M----AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAFVPPK--DRDIAMVFQSYALYPHTVYDNIAFPLKLRKVPRQEQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEMTMGDRIAVMNRGVLQQVGSPDEVI
4	PPA-I	1z47A1	0.311	0.973	4.788	threading_4	---GSMTIEFVGVEKIYGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHTVYDNVSFGLREKRVPEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDEEALEVADRVLVLHEGNVEQFGTPEEVY
5	HHPRED-l	1l2t_A	0.273	0.960	2.165	threading_5	------MIKLKNVTKTYKMIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELRDKIGFVFQQFNLIPLTALENVELPLIFKYGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR---
6	HHPRED-g	2it1_A	0.344	0.969	2.411	threading_6	MVE----IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHTVYKNIAFPLELRKREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAELAMADRIAVIREGEILQVGTPDEVY
7	SP3	1g2912	0.268	0.978	4.121	threading_7	MA----GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGPKDRDIAMVFQSYALYPHTVYDNIAFPLKLRKVPEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDVEAMTMGDRIAVMNRGVLQQVGSPDEVA
8	SAM-T99	2it1A	0.333	0.973	2.439	threading_8	----MVEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHTVYKNIAFPLELRKAPREIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALMADRIAVIREGEILQVGTPDEVY
9	MUSTER	2onkA	0.288	0.942	3.380	threading_9	------MFLKVRAEKRLGN----FRLNVDFEMGDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIGFVPQDYALFPHSVYRNIAYGLRNVERVERDRRVREMAEKLGI-AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDIEAAMLADEVAVMLNGRIVEKGKLKELK
10	SPARKS	1g2912	0.264	0.978	4.140	threading_10	----MAGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFDRDIAMVFQSYALYPHTVYDNIAFPLKLRKVPEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDVEAMTMGDRIAVMNRGVLQQVGSPDEVY

Predicted Tertiary Structure


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TM-score=0.843 to 2onkA SCOP code=c.37.1.12	TM-score=0.852 to 2onkA SCOP code=c.37.1.12	TM-score=0.846 to 2onkA SCOP code=c.37.1.12	TM-score=0.780 to 1ji0A SCOP code=c.37.1.12	TM-score=0.845 to 2onkA SCOP code=c.37.1.12