Template-based Modeling Results for YBBJ_ECOLI

Submitted Primary Sequence

>Length 152
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
CHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
23210220010000000000000110111010000000000000022113101200000000000000000121123324334323231123013101110102110330101020121000010333033112000000201102112236
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
1	MUSTER	2exdA	0.169	0.467	1.625	threading_1	---------------------------------------------------------------------------RRETTDIGGGKYT-----FELKGKVGKVVKIA-EDHYLVEVEGDKWIAYSDEKLSLGDRVMVVDVDGLKLKVKRIPP
2	SPARKS	2k5ha	0.215	0.520	2.229	threading_2	-------------------------------------------------------------------------YFQGHMAARITGEPSKKAVSDRLIGRKGVVMEAISPQNGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLEE
3	PROSPECT2	2k5hA	0.229	0.632	1.417	threading_3	MGSSHHHHHH----------------------------------SSGRENLYF----------------------QGHMAARITGEPSKKAVSDRLIGRKGVVMEAISQNSGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLES
4	PPA-I	2exdA	0.169	0.467	4.013	threading_4	---------------------------------------------------------------------------RRETTDIGGGKYTFE-----LKGKVGKVVKIA-EDHYLVEVEGDKWIAYSDEKLSLGDRVMVVDVDGLKLKVKRIPP
5	HHPRED-l	2k5h_A	0.185	0.605	3.775	threading_5	------------------------------------------MGSSHHHH----------------HHSSGLYFQGHMAA-RITGEPSKKAVSDRLIGRKGVVMEAISQNSGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLE-
6	HHPRED-g	3cp0_A	0.237	0.388	3.493	threading_6	-------------------------------------------------------------------------------------------SPRALVGHRAEVLEDVGATSGQVRLDGSIWSARS-HTFAEGEIVSVIDIQGTTAIVWKEA-
7	SP3	2k5ha	0.198	0.632	1.329	threading_7	-----------------------------------------MGSSHHHHHHSSGRENLYF---------------QGHMAARITGEPSKKAVSDRLIGRKGVVMEAISPQSGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLEE
8	SAM-T99	2k5hA	0.260	0.632	2.561	threading_8	MGSSHHHHHH------------------------------------SSGRENLYFQGHMAARIT----------------GEPSKKAV----SDRLIGRKGVVMEAISPQNGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLEE
9	MUSTER	2k5hA	0.225	0.526	1.577	threading_9	--------------------------------------------------------------------LYFQGHMAARITGEPSKKAVS----DRLIGRKGVVMEAISPNSGLVKVDGETWRATSGTVLDVGEEVSVKAIEGVKLVVEKLEE
10	SPARKS	2exda	0.169	0.467	1.906	threading_10	---------------------------------------------------------------------------RRETTDIGGGKYT-----FELKGKVGKVVKIA-EDHYLVEVEGDKWIAYSDEKLSLGDRVMVVDVDGLKLKVKRIPP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.605 to 2exdA SCOP code=b.40.12.1	TM-score=0.554 to 2exdA SCOP code=b.40.12.1	TM-score=0.573 to 2exdA SCOP code=b.40.12.1	TM-score=0.544 to 2exdA SCOP code=b.40.12.1	TM-score=0.607 to 2exdA SCOP code=b.40.12.1