Template-based Modeling Results for YBAE_ECOLI

Submitted Primary Sequence

>Length 566
MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEHHCCEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCEEEEEECCCCHHHHHHHHCCHHCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHCCHHEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEECEEECCCCCCCHHHEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
53422112101200320223322020210041000022002100310341100101042232330101001213201220023014222231013003101220211022111032323221010011222322111111121111000200200020244222000100310101331110001013103012132020200111020114121132112102202012310010102211220011000102110333121101000101202221010110321123212021000000121122001120322131212323313312212211110000001332232122002101110112000201300321011030111111222231333242121010011222102100210120023110201000010321110123121000000100131121100100111211220121210110120021024233332123002200210032010000000101011331020020002110002101031345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
1	MUSTER	1dppA	0.170	0.777	2.176	threading_1	------------------------------------------------------------------------------------------------------------------------KTLVYCSEGSPEGFNPQLFTSGTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNRELNADDVVFSFDRQKNAQNGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYNPIGTGPFQLQQYQKSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVY--QGAGVSAKNLIPGYNDDVQDYTYDPEKAKSIDLWAPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWGDNGDPDNFFATLFSCAASEQGSYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE----
2	SPARKS	3t66a	0.140	0.769	5.613	threading_2	-----------------------------------------------------------------------------------------------------------------------EKHIHFLFNVSTNSLDPHVDMTY--IPVRAGITETLVRVDEENVTIAPWLAESWD-STDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALKIDEIEA-DGYTLHITTKEPFPEFISELVNPNVSIIDVTEHPVGTGPFALESFTPGKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANTETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTI--MLGYAEVADGPFIPFAPSYEKKETGTDIAIHFTVLTYGRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPTG-ALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENVKNWVTTRSEYYMINQLDV-----
3	PROSPECT2	1dpe_	0.159	0.777	3.742	threading_3	------------------------------------------------------------------------------------------------------------------------KTLVYCSEGSPEGFNPQLFISGTTYDASVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKELNADDVVFSFDRQKNAQNPYHLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYNPIGTGPFQLQQYQDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAV--YQGAGVSAKNLIPPTMWGYNDDVQDYTKGFSIDLWAMPVPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSI----E
4	PPA-I	3m8uA	0.137	0.784	3.415	threading_4	-----------------------------------------------------------------------------------------------------------------------DKTFINCVSRSPTGFSPALVMDGISYNASQQVYNRLVEFKRGSTDIEPALAESWTVSDDGLTYTFNLRKGVKFHSNKDFNADDVVFSFQRQLDPNHAMKFSTLLKSVEKVDMHTVKITLNRQDATFLASLGMDFISIYSAEYTPIGTGPFLFAGYQDQKSRYLAHKEYWKGKADIDRLIFEIVPDATARYAKLQAGACDLIDFPNAADLEKMKTDPKGLNIAYIAFNTEKAPFDNVKVRQALNYAVDKNAIIDAVYRGAGVAAPLPPTIWGYNNEITGYEYSPEKAKETDIWVQPNPNPRRMAELVQSDWEKVGVKSKLVSYEWGDYIKRTKAGELTAGTYGWSGDNGDPDNFLSPLFGSENVGNSYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVLLKEQAPWINVAHSINFAPTSKRVQDYKQSPFGYTYLYGTKLAD---
5	HHPRED-l	1dpe_A	0.166	0.777	3.504	threading_5	------------------------------------------------------------------------------------------------------------------------KTLVYCSEGSPEGFNPQLFISGTTYDASSPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKELNADDVVFSFDRQKNAQNPYGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKELNPIGTGPFQLQQYQDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGA--GVSAKNLIPPTMDDVQDYTYDPEKAKALLVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAAQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE----
6	HHPRED-g	1dpe_A	0.168	0.777	3.242	threading_6	------------------------------------------------------------------------------------------------------------------------KTLVYCSEGSPEGFNPQLISGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKELNADDVVFSFDRQKNAQNPYHKVELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYNPIGTGPFQLQQYQKDRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQLMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKA--VYQGAGVSAKNLIPGYNDDVQDYTYDPEKAKALLKEAGYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCYFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE----
7	SP3	3t66a	0.140	0.769	5.886	threading_7	-----------------------------------------------------------------------------------------------------------------------EKHIHFLFNVSTNSLDPHVDMTY--IPVRAGITETLVRVDEENVTIAPWLAESWD-STDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALKIDEIEA-DGYTLHITTKEPFPEFISELVNPNVSIIDVTEHPVGTGPFALESFTPSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQAATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTI--MLGYAEVADGPFIPFAPSYEKKETGTDIAIHFTVLTYGRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPTGA-LNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENVKNWVTTRSEYYMINQLDV-----
8	SAM-T99	1dppA	0.168	0.777	3.710	threading_8	------------------------------------------------------------------------------------------------------------------------KTLVYCSEGSPEGFNPQLFTSGTTYDASSPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKADDVVFSFDRQKNANPYMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEDNPIGTGPFQLQQYQKDRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPPAARMKQDKSINEMPGLNVGYLSYNQKPLDDVKVRQALTYAVNKDAIIKAVYQGAG--VSAKNLIPPYNDDVQDYTYDPEKAKALLKEAGLEPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAAQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE----
9	MUSTER	3m8uA	0.147	0.781	2.167	threading_9	-----------------------------------------------------------------------------------------------------------------------DKTFINCVSRSPTGFSPALVMDGISYNASQQVYNRLVEFKRGSTDIEPALAESWTVSDDGLTYTFNLRKGVKFHSNRDFNADDVVFSFQRQLDPNHAMKFSTLLKSVEKVDMHTVKITLNRQDATFLASLGMDFISIYSAEYTPIGTGPFLFAGYQVQKSRYLAHKEYWKGKADIDRLIFEIVPDATARYAKLQAGACDLIDFPNAADLEKMKHSQSGLNIAYIAFNTEKAPFDNVKVRQALNYAVDKNAIIDAVY--RGAGVAAKNPLPGYNNEITGYEYSPEKAKETDIWVQPVVNPRRMAELVQSDWEKVGVKSKLVSYEWGDYIKRTKAGELTAGTYGWGDNGDPDNFLSPLFGSENVGNSNYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVLLKEQAPWINVAHSINFAPTSKRVQDYKQSPFGYTYLYGTKLA--D-
10	SPARKS	3rqta	0.136	0.756	5.180	threading_10	-----------------------------------------------------------------------------------------------------------------------GKDLNISLPLKTKSIAPYETDVPVKI----GAAESLFKTND-QGKIEKALVKSYHQPND-TTLDIELKDNIKFQNGQKLTAEKVKSSLENSKKSDLVKYSLP-ISSITA-KGQKLTIKTNSAYPELVSELANPFAIYDTDAKTPVGTGPYQIKDYKQRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVQDIENKESGFRTSLLYNHTNK---KTKSVREALDHIIDRQGIADHI--YQGYAKPATSPFNPYIKEPKLTKQNIEQAKKIKLITYDRPELSKIAQVLQSDAKKANIEIDIKSVDDIEGYLKDRSA-WDATYSFGTIPRGDTGYFFNQAYKKDG-AINKGDYNNSNVDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGIYLIYRTTIE----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.808 to 1dppA SCOP code=c.94.1.1	TM-score=0.777 to 1dppA SCOP code=c.94.1.1	TM-score=0.754 to 1uqwA SCOP code=c.94.1.1	TM-score=0.754 to 1uqwA SCOP code=c.94.1.1	TM-score=0.790 to 1dppA SCOP code=c.94.1.1