Template-based Modeling Results for YAIW_ECOLI

Submitted Primary Sequence

>Length 364
MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ
5542221110000000000102232322244233212002002330122041131002000200232212222310010000012312231122121002100220141044120010001100323124231123102312233102200210041011122012211212210111000100231332121423120111011231000000000010201121000000001000000000001200130131201120000113233313211001200331212222014214423222132021023002001232233022310110313123023302110003002321130255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ
1	PROSPECT2	3a6pA1	0.092	0.989	1.334	threading_1	AMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCECVPCGLRLAEKTQVEKVYLKNSVMELIANGTLNILEEELSRIVVEMIKREWP---QHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTQNMERIFSFLLNTLENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGALLIAVSRKGKLEDRKDVAMHYILSAAQTADGGGLVEGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFD-SDEDFNAFFNSSRAQQGTF
2	HHPRED-l	2y8p_A	0.122	0.495	1.020	threading_2	--------------------KHDYTNPPWN-AKVPV---Q---RA--------MQWMPISQKAGAAWGVDPQ-----LITAIIAIESGGNPNAV--------------------------------------------------------------------------SKSNAIGLMQLKASTSRDVYRRMGWSGE-PTTSELKNPERNISMGAAYLNIPLAGIEDQYALVVSYANGAGALL---------RTF--------------SS--DRK----KAISKINDLDADEFLEHVA--RNHPAPQAPRYYKLEQALDAMLEHHH--------------------------------------
3	PROSPECT2	1didA	0.079	0.937	1.330	threading_3	VQPTPA-DHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELIPFDATEAEKILGDFNQALKDTGLKVP----MVTTNLFSHPVFKDGGFTSND------RSIRRFALAKVLHNIDLAAEMGAEYDGSKDLAAALDRM--REGVDTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEH------GDIEQMAGLNFTHGIAQALWAEKNGQRGIKYDQDLVFGHGDLTSAFFTVDLLENGFPGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKERALA----FRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAIRLNQLAIEHLSR
4	PROSPECT2	1gw5b	0.055	0.956	1.250	threading_4	SCMQTDNLELKKLVYLYLMNYAKSQPDCIRVDKITEYLCEPLRKCLKHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTGQIFILDCLSNYNPKDDREAQSICERVHANSAVVLSAVKVLMKF-----------LELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYV-----ALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSQTKVNYVVQEAIVVIRDIFRKPNKYESIIATLCENLDSLDEPDARAAMIWIIDNADELLESFLEG
5	PROSPECT2	1w36D	0.100	0.989	1.222	threading_5	AGDEHPAVTLAAALLSHDAGEGPLLATCVSEIGELQNWEECLLAVSRGDEPTPNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRMIDLPMMSRLIDALPVEAGAVLGDICAYANAGFTAERARQLHVPAGTGTEAASLRDSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY----GRYLDLLQARAEPDLIIQAFVAGLNERIEQFMQQKRQPSRLPEHETRTPVVTRELDERILSAAIATRTAALFSS
6	PROSPECT2	1m5ya	0.123	0.871	1.196	threading_6	VDKESDVDGLMQSVKLNAAQ------ARQQLPDDATLRHQIMERLI---------MDQIILQMGQKMGVKIS--------------------------DEQLDQAIANIAKQNNMTLDQMRSRLAY---DGLNYNTYRNQIRKEMIISEVRNNEVRRRITPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGR---IQELPGIFAQALSTAKKGDIESKNIHILLKPSPIMTDEQARVKLEQIAKTTFAAAAKEFSQDPGSANQGGDLPDIFDPAFRDALTRLNKGQMSAPVHSSFGRNVDRAYRMLMNRKFSEEAASWMQS
7	MUSTER	3qxyA	0.141	0.956	0.598	threading_7	LDPVACFLSWCRRVGLELSPKVAVSRQGTVAGRESVQAGELLFV-VPRAAQHTCSIGGLLERERV--ALQSQSGWVPLLLALLAPASRWALWPELGRLEHPMEEERRCLLQGTGVPEAVEKDLANIR----SEYQSIVLPFMSLELYHQLVALVMAYSFQEPLEKEPNSPMVPAADILNHLANHNANLEYSANTQPIPKGHEIFNTYGQ--MANWQLIGFVEPYPDNTDDTADIQ--MVTVREAALQGTKTEAERHLVYERWDFLMVGEEEEVLTEEELTTTLKVLCMPAEEFRELKDQTNIPKLKASQLLQNSVLLTLQTYATDLDQGL-----LSNKEVYAKLSREQQALQVRYGQKMILHQ
8	SPARKS	3n6sa	0.122	0.791	0.567	threading_8	----------------FGVKCHNTDSEPLKNEDNLLTMIDMARKRQPGVFHRMITNEQDLKMFLLSKGA--SKEVIASII---------SRYPR---AITRTPENLSKRWDLWRTSDLEIVNILERRSNNNLNLENNIKFLYTRKCLCRLLTNAPRTFSNSLDLNKQM------------VEFLQAAGLSLGHNDPADFVRKIIFKN-------PFILIQSTK--------------RVKANIEFLRSTSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYDVIFLAEKKFNDKIDCLMEE--N--ISISQI----IENPRV---LDSS--ISTLKSRIKELVNA
9	PROSPECT2	1xis_	0.072	0.915	1.192	threading_9	NYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELLIPFGSSDSEREKRFRQALDDTGMKVP----MATTNLFTHPVFKDGGFTAND--RDVRRYALRKTIR------NIDLAVELGAEGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIEPKPNEPRGDILLPTVGHALAFIERLERPELVGHEQMAGLNFPHGIAQALWAGKQNGIKYDQDLRFGAGDLRAAFWLVDLLESA------GYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAA-----FRADPEVQEALRASRLDELARPT--------AADGLQALLDDRSAFEERLDQLAMDHLAR
10	PPA-I	3hotA	0.117	0.868	0.843	threading_10	--VPNKEQTRTVLIFCFHLKKT------------AAESHRMLVEAFGEQVPT-VKTCERWFQRFKSGDFDVDDKE-----------HGKPPKRYEDAELQALLDEQKQLAEQLEVSQQAVSNRLREM-GKIQKVGRWVPHELNERQMERRKNTCEILL-SRYKRKSFLHRIVTGDEKWIFF----VNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQHRVIFLHDNAPSHTARAVRDTLETLNWE-------VLPHAAYSPDLAPSDYHLFASMGHALAEQRF---------DSYESVKKWLDEWFAAKDDEFYWRGIHK

Predicted Tertiary Structure


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TM-score=0.583 to 1w63C SCOP code=i.23.1.1	TM-score=0.489 to 1slyA SCOP code=a.118.5.1	TM-score=0.782 to 1didA SCOP code=c.1.15.3	TM-score=0.690 to 2vglB SCOP code=i.23.1.1	TM-score=0.394 to 3pjrA SCOP code=c.37.1.19