Template-based Modeling Results for YAHF_ECOLI

Submitted Primary Sequence

>Length 515
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
54111102232121000000001203513113100001003101100330112022023032200100010222221210011012112232321233231210010143124010000001021003002201423010000033021210100121123311000012011001111100102003402000001011001100110222210001000001311214110010110000023133020000001111221111022113203200000001202232233103103112300030023020212313221111101120223133332101000010000000010002312312131322231314211411201011002120111211120102100110122142341100000000011123111010030022022101432330000000011421232132003002402000020122001002211232344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
1	SAM-T99	1scuA	0.226	0.542	4.786	threading_1	---------------------SILIDK----NTKVICQGF-----TGSQGTFHSEQAIAYGTKMVGGVTPGKGG------------------TTHLGLPVFNTVREAVAA-TGATASVIYVPAPFCKDSILEAIDAGIKIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP----IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGAGAIIGTADEKFAALEAAGVKTVRSLADIGEALKTVLK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	SAM-T99	1eucA	0.220	0.555	4.715	threading_2	-------------CSYTASRKHLYVDK----NTKVICQGF-----TGKQGTFHSQQALEYGTNLVGGTTPGKGG------------------KTHLGLPVFNTVKEAKEQ-TGATASVIYVPPPFAAAAINEAIDAEVPVVCITEGIPQQDMVRVKHRLLRQGTRLIGPNCPGVINPGIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP----FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQPKSKPVVSFIAGLTAPPGRRMGHAGAIGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	SPARKS	3dmya	0.387	0.748	6.493	threading_3	------------------------------------------------------------------------------------------------ALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNV--FSDNVTLEDEIQLKTRAREKG-LLVGPDCGTSIAG--TPLAFANVPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALELSA-DEKSEVLAFVSKPPA--EAVRLKIVNAKTGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAI--------------APVSSGFICGLYTGGTLAAEAAGLLAGHLGVETHQ----------HGLDADSHQIIDLGDDFYTVGRPHP-IDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACA-ARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSHT
4	SPARKS	3pffa	0.146	0.637	4.556	threading_4	HEVTIFVRRGG-PNYQEGLRVMGEVGKTTGIP--IHVFGTETHMTAIVGMALGHRPIPGKSSRHTKAIVWGMQTRQGMLDFDYVCSRDEPSVAAMVYPFTFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNAQITIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGIGILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGG----DRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGLTKPIVCWCIGTCATM-------QASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLV---ANGVIVP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	3dmyA	0.347	0.744	3.596	threading_5	ALTQV------------------------------------------------------------------------------------------------RRWDSACQKLPDANLALISVAGEYAAELANQALDRNL--NVFSDNVTLEDEIQLKTRAREKGL-LVGPDCGTSIAGTPLAF--ANVPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDL---SREVGGISALTALELSADEKSEVLAFVSKPPAEAVRLKIVNAKTGKPTVALFLGYTPAVARDENVWSSLDEAARLACLLSRVT----------------ARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVETHQHG----------LDADSHQIIDLGDDFYTVGRPHP-IDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACA-ARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSHT
6	HHPRED-l	2fp4_A	0.223	0.550	3.798	threading_6	----------SY-----------------------------------TA---SRKHL-YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLPGKGGLGLPVFNTVKEAKEQT-GATASVIYVPPPFAAAAINEAIDAEVPVVCITEGIPQQDMVRVKRLLRQGKTRLIGPNCPGVINPGECKMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGG----DPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEAAEFLKQHNPKSKPVVSFIAGLTAPPGRRM-G-AGAIIGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PPA-I	3dmyA	0.394	0.750	3.248	threading_7	------------------------------------------------------------------------------------------------ALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNV--FSDNVTLEDEIQLKTRAREKGL-LVGPDCGTSIAGTP--LAFANVPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALE-LSADEKSEVLAFVSKPPAEAVRLKIVNA-KATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIA--------------PVSSGFICGLYTGGTLAAEAAGLLAGHLGVETHQ----------HGLDADSHQIIDLGDDFYTVGRPHP-IDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAAR-LDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSHT
8	HHPRED-l	3pff_A	0.169	0.586	3.752	threading_8	HEVTIFVGGPNYQEGLRVMGEVGKTLGHRPIP------------------GKSTT---LFSRHTKAIVWGMQ-TRAVQGMLD-FDYVCSRPSFTGDGIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNAQIRIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGIGILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGG----DRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-YKICRGIKRLTKPIVCWCIGTCAT--------------QASAKNQALKEAGVFVPRSFDELGEIIQSVYEDL-----------------------VANGVIVP----------------------------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-l	3dmy_A	0.411	0.742	7.845	threading_9	--------------------------------------------------------------------------------------------------TQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNV--FSDNVTLEDEIQLKTRAREKGLLV-GPDCGTS-IAGTPLAFANV-PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALE-LSADEKSEVLAFVSKPPAEAVRLKIVNA-KATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRV--------------TARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAG-----HLGVE---THQHG--LDADSHQIIDLGDDFYTVGRPHP-IDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKAC-AARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALI-HPLS-
10	SP3	3pffa	0.147	0.633	4.049	threading_10	HEVTIFVRRGNYQEGLRVMGEVGKTTGIP-----IHVFGTETHMTAIVGMALGHRPIPGKSSRHTKAIVWGMQTRQGMLDFDYVCSRDEPSVAAMVYPFTFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNAQITIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGIGILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGG----DRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKERLTKPIVCWCIGTCATM-------QASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLV---ANGVIVP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.530 to 1oi7A SCOP code=c.2.1.8	TM-score=0.752 to 1scuA SCOP code=c.2.1.8	TM-score=0.745 to 1eucA SCOP code=c.2.1.8	TM-score=0.523 to 1oi7A SCOP code=c.2.1.8	TM-score=0.621 to 1oi7A SCOP code=c.2.1.8