Template-based Modeling Results for YAGS_ECOLI

Submitted Primary Sequence

>Length 318
MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA
CCCCEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEHHHHHCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA
543120111320210030033132010001002000102122320210000220122211212210010001020110121220231011003003100122010100011100122202211322210132211210001301110000002131011110010000010020100002232321201012012122312112111231100000102222222100010223222100000000002132100000000122011031012102311310021012102211322011200110001001203345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA
1	MUSTER	1rm6B	0.282	0.959	2.895	threading_1	LTDFRTHRPATLADAVNALAA-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLDGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKG-DKCHVI-VKSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESG---AEHLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMVP--VDALLGGAETLAQLVRKTSNVITGVKYRRRVLLAISRKVVDQLWE-A
2	SPARKS	1rm6b	0.275	0.959	6.209	threading_2	LTDFRTHRPATLADAVNALAAEA-TLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTADGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKGDK--CHVIVKSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESGAE---HLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMVP--VDALLGGNETLAQLVRKTRTTITGVKYRRRVLLAISRKVVDQLWEA-
3	PROSPECT2	1rm6B	0.290	0.965	4.966	threading_3	LTDFRTHRPATLADAVNALAAEA-TLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTADGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKGDK--CHVIVKSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESGAE---HLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMVPVDDAAAETLAQLVRKTSNVLRTTITGVKYRRRVLLAISRKVVDQLWE-A
4	PPA-I	1rm6B	0.287	0.965	4.355	threading_4	LTDFRTHRPATLADAVNALA-AEATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTADGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKGD--KCHVIVKSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESGAEH---LTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMVPVDDAAAETLAQLVRKTSNVLRTTITGVKYRRRVLLAISRKVVDQLWEA-
5	HHPRED-l	1rm6_B	0.292	0.959	5.865	threading_5	LTDFRTHRPATLADAVNALAA-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLDGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKG-DKCHVIV-KSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESG---AEHLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGGLRVAITGSNSAPLMVP--VDALLGGAQLVRKTSNVLRTTITGVKYRRRVLLAISRKVVDQLWEA-
6	HHPRED-g	1rm6_B	0.282	0.959	5.277	threading_6	LTDFRTHRPATLADAVNALAA-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLAISTLADGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKG-DKCHVIVK-SDRCYATYHGDVAPALMVLDARAEIVGPAGK-RTVPVAQLFRESGA---EHLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMVP--VDALLGGNETLAQLVRKTSNVLRTTKYRRRVLLAISRKVVDQLWEA-
7	SP3	1rm6b	0.275	0.959	6.255	threading_7	LTDFRTHRPATLADAVNALAAEA-TLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTADGSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQ---SEWWRSGNGYCLKYKGDK--CHVIVKSDRCYATYHGDVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESG---AEHLTLEKGELLAAIEVPPTGAWSAAYSKVRIRDAVDFPLAGVAAALQRDGDLRVAITGSNSAPLMV--PVDALLGGNETLAQLVRKTRTTITGVKYRRRVLLAISRKVVDQLWEA-
8	SAM-T99	1ffuC	0.288	0.840	5.085	threading_8	MIPFEYHAPKSVGEAVALLGQLGSAKLLAGGHSLLPMMKLRFAQPEHLIDINRIELRGIRE-EGSTVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG-------------------------------------------NDHPALSIAVEAHFVLEGPNGR-RTVPADGFFLGTY-----MTLLEENEVMVEIRVPAFAGTGWAYEKL-KRKTGDWATAGCAVVMRKSGGIRIALTNVAPTALRAEAAEAALLGKAQAAADAAIAICEPAEDADYKTAMAGQMVKRALNAAWARC
9	MUSTER	1zxiC	0.264	0.846	2.550	threading_9	MISFDYHRPKSIADAVALLTKLEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNA-------------------------------------------ANGDPGNDMPALMQCLGAAYELTGPEG-ARIVAARDYYQGAY-----FTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGSASIGLTNVANTPLWAEEAGKVLVGTADKAVALAEAITDGRGPAEYRTKMAGVMLRRAVERAKARA
10	SPARKS	1qj2c	0.254	0.843	5.535	threading_10	MISFDYHRPKSIADAVALLTKGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNA-------------------------------------------ANGDPGNDMPALMQCLGAAYELTGPEG-ARIVAARDYYQGAYFT-----AIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGASIGLTNVANTPLWAEEAGKVLVGTAALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKAR-

Predicted Tertiary Structure


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TM-score=0.944 to 1rm6B SCOP code=d.87.2.1	TM-score=0.945 to 1rm6B SCOP code=d.87.2.1	TM-score=0.942 to 1rm6B SCOP code=d.87.2.1	TM-score=0.950 to 1rm6B SCOP code=d.87.2.1	TM-score=0.950 to 1rm6B SCOP code=d.87.2.1