Template-based Modeling Results for YAGM_ECOLI


  Submitted Primary Sequence

>Length 284
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
CCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCEEEECCCCCCCEECCCCCCCEEEEEEEEEEECCEEEECCCEEEEEHHHHHHHCCCCHHHHCCCCCCEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
55332120100100213321313333230012110210101032322110012003214321110011002100100220110110022013101312133222334142312032000200112022313110021032313232103322100233123232312021000012223121303212110100000201022000000100000022002110330133322222010000010000221000000013232234230332000222233395
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
1PROSPECT21ezvb0.0880.9231.322threading_1DAPTKISTLAVKVHGGSRYATKDGGTFKSTLDREYITLKATFLKDYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEVS-----------GENVVEADLKRFVDESLLSTLP------AGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGIPVNKASLAQYEVLANYLTSALSELSGLISSAKLD-----KFTDGGLFTLFVRDQDSIELNFDAVKDFKLGKFPYLDEL
2HHPRED-g3ebk_A0.2310.2291.201threading_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NEDCF--RHESLVPNLDIIAAGTSEALT--------QYKCWIDRFSYDDALVS--KY--TDS----QGKNRTTIRDYNDKGKA
3PROSPECT21utea0.0590.9011.204threading_3PTPILRFVAVGDWGGVPNAPFHTAREMA------------------NAKAIATTVKTHDAKDKRFQETFEDVFSDPSLRNNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLVAGHYPVWSIAEHGPTKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGGFAYVEITPKEMSVTYIEASGK----------SLFKTKLPRRA
4PROSPECT21nijA0.0700.8521.088threading_4EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLGMADPGPIIQTFFSHEVLCQRADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINPVYTVTHGDIDLGLLFNTNGFMLEENVVS------------------------TKPRFHFIADKQNDISSIVVELDYPVD--------------ISEVSRVMENLLLESADK----LLRYKGMLWIDGELLFQGVQRLYSADWDRPWGDEFIGIQLPAGLRK
5PROSPECT21i8ta0.0940.8941.079threading_5GAHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNGVKDPQEAQNIINAQKKKEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQYTKLIEKML--------------EGVDVKLGIDFLKDKDSLASKA-------HRIIYTGPIDQYFDYRFGALEYRSLKFETERHEFPNFQGNAVINFTDANVPYTRIIEHKHFDYVETKHTVVTKEYPLEWKVG---------DEPYYPVNDEDKVIFGGRLAEYTD
6PROSPECT23ii6X0.0690.8131.076threading_6KISNIFEDVEFCVMSGTQPKPDLENRIAYIVQNPGPDTYCVIAGSENIR-VKNIILSNKHDKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTD----LNQLKEVFSG-------------IKNSNEQTPEEMASLIADLEYRYSWDCSPLS------------------MFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHG-----------------AKVVSCLAEGVSHVIIGEDHSRVARTFKRKFKILKEIDKCELQ
7MUSTER3o8yA0.1410.9260.600threading_7ERGAVDSYDVTVDEEGEKRKYGSNDDKYITLKTP-DYIEFPCYGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGF-PLSIDAKCHKDLPRDDSEKGVDFVLNYSKAMENLFINRF----MHMFQSSWND-----ADFEKIFVKISNTISERVMNHW---QEDLMFGY--QFLNGANPVLIRRCTELPEKLPVTTEMV-LSLEQEVQQGLDGIDANKTDPCTLQFLAAICLLYKNLANKIVPIAIQLNQIPG---DENPIFLP-SDAKYD
8SPARKS1daaa0.1070.9190.562threading_8WNDQIVKDEEVKIDKE---DRGYQFGDGVYEVVKVYNGEM-FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEK-NELNTGHIYFQVTRGTSPRAHQFPENTVKPVITKENPRLENLEKGVKATFVEDI---RWLRCDIKSLNLLGAVLAKQEAHEKGC----YEAILHRNNTVTE------GSSSNVFGIK----DGILYPANNMILITRDVVIACANENMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTQKQFETKIP-
9PROSPECT22nxfA0.0660.8491.075threading_9DPVFTFGLIADVQYADIEDGENYLRTR-------------RRYYRGSADLLRDAVLQRRDASDRALDTVDACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQGSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHVLCFIAGHDHDGGRCTDSSGAQHITLEGVIETPP-----------------------HSHAFATAYLYEDRVKGRGRVED-------LTITYS
10PPA-I2p9bA10.0540.7820.691threading_10LRNTGADGRIEQVAPSIETSIPAE--YHYLDGTGINAHTHLFSYAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRI--LASGPLAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAIGVGTDTGTFVPQYATWRELELLVAYAGFSPAEALHAATAVVDAETGSLNANPLDDLRALEHPALVIAAGHPVWRPGPKRFADIDALLDEAYA----------------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.592 to 1kb9B
SCOP code=d.185.1.1
TM-score=0.270 to 2retA
SCOP code=d.24.1.7
TM-score=0.607 to 3d03A
SCOP code=d.159.1.11
TM-score=0.667 to 1nijA
SCOP code=c.37.1.10
TM-score=0.652 to 1i8tA
SCOP code=c.4.1.3