Template-based Modeling Results for YAGJ_ECOLI

Submitted Primary Sequence

>Length 243
MEARVTVAGMGLVMEVQDYFDGEADRLAKAWLAEYTPQIKSLKDERKEAYRQIVEMSTEPQDVDLVRPANKFEMTRVREGEKEADLPVWKHHLLCDESGNYPALLNHWETKVFEIETKREGFAFWYRNPQYTGQSSLGIAYVEAEQYKIVRPDFLFFAEQDGKMVVDLVDPHSLHLADALPKLEGLALYAEHHSDAYRRIESVAEVKGKLRVLDLKRQDVQDAVATAENAETLFSSGLADDYQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEARVTVAGMGLVMEVQDYFDGEADRLAKAWLAEYTPQIKSLKDERKEAYRQIVEMSTEPQDVDLVRPANKFEMTRVREGEKEADLPVWKHHLLCDESGNYPALLNHWETKVFEIETKREGFAFWYRNPQYTGQSSLGIAYVEAEQYKIVRPDFLFFAEQDGKMVVDLVDPHSLHLADALPKLEGLALYAEHHSDAYRRIESVAEVKGKLRVLDLKRQDVQDAVATAENAETLFSSGLADDYQ
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEARVTVAGMGLVMEVQDYFDGEADRLAKAWLAEYTPQIKSLKDERKEAYRQIVEMSTEPQDVDLVRPANKFEMTRVREGEKEADLPVWKHHLLCDESGNYPALLNHWETKVFEIETKREGFAFWYRNPQYTGQSSLGIAYVEAEQYKIVRPDFLFFAEQDGKMVVDLVDPHSLHLADALPKLEGLALYAEHHSDAYRRIESVAEVKGKLRVLDLKRQDVQDAVATAENAETLFSSGLADDYQ
552202000100022012102210120032002201210330333123103201411322322312222232321413313332303213200001220302121231123001122323100000101323241000000121322311210000002122300000011111301210030100020023013002101101323320200213333012101313303101212224334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEARVTVAGMGLVMEVQDYFDGEADRLAKAWLAEYTPQIKSLKDERKEAYRQIVEMSTEPQDVDLVRPANKFEMTRVREGEKEADLPVWKHHLLCDESGNYPALLNHWETKVFEIETKREGFAFWYRNPQYTGQSSLGIAYVEAEQYKIVRPDFLFFAEQDGKMVVDLVDPHSLHLADALPKLEGLALYAEHHSDAYRRIESVAEVKGKLRVLDLKRQDVQDAVATAENAETLFSSGLADDYQ
1	PROSPECT2	1us4A	0.068	0.909	1.221	threading_1	AQEFITIGSGSTTGVYFPVATGIAKLVNDSVANINAINAGEFEALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALRKDAGIRTVADLKGKRVVVGDVGSGTEQRVSASQGIQLQDKRADALFYTVGLGTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYTVAVQALIASERLS--------EETVYKFKAVFGNLEAFKKIH--------------PNLERFFGLEKAVKGLPIAGVL
2	PROSPECT2	2og5A	0.096	0.947	1.124	threading_2	SRYDVT-----LDQSDAELVEEIAWKLATQWVEAARNAWHAWPATLRRDLAGFRRDSGPGLPVDSMGLPPTPRVNGSVQREASLPEKNGALVQDVVPVPGMEEFQGNAGSTLLTFHEHRPDFVMLLRADPTGRAGALWAPEFRTAPPPSFQAPAPVLLGDRSDPDLRVDLAATEPVTERAAEARELQAHFDATAVTHRRTEFTPRYDGTDRWLLTDLRRSRAMRPA--------DGYVLGAAP
3	PROSPECT2	1s8eA1	0.111	0.778	1.086	threading_3	M--KFAHLALGYEQFHKPQREEEFAEAFKNALEIAVQESRPSPGTLKKAIALLQIPKEHSIPV-----------------------------FAIEGNLVRTQRGPSV---LNLLEDFGLVYVIGMRKEKVENEY---LTSERLG-----NGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLREVSEARGEDYFEIGLGDLPEGKRYETSYSGSPV------------VYPGSLERWVN
4	PROSPECT2	1s3gA	0.082	0.802	1.065	threading_4	M--NIVLMGLTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDC---------------------------DNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELIARLTGRRICKVCGTSYHLLFNVEGKCDKDGGELYQRADDN--------PDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKKDVFKDLDVILQ----------GNGQ
5	PROSPECT2	2gjkA3	0.100	0.901	1.044	threading_5	--------PLGSRYEDAYQYQNIFGPLVKLEADYDKKLKESQSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF--------TAQGLPDLNHSQVYAVKTVLQRPLSLIQARQGNGPTGLKVVRLCAKSREAIDSPVSFLALHNQIRN------MDSMPELQKLQQLKDESSADEKRYRALKRTAERELLMNADVICCTC--VGAGDPRLAKMQFERLVVLGIRPIRL
6	MUSTER	1ihoA	0.174	0.922	0.942	threading_6	----MLII---TLPLLRQQIRRLRMELVPTMGNLHDGHMK-LVDEAKARADVVV-VSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFASVKEIYPNGTET--HTYVDVPGLSTM----LEGASRPGHFR-GVSTIVSKLFNLVQPDIACFGEKDFKMVADMGFDIEIVGVPIMRAKDGLALSSR---NGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEGQELNEKGFRADDI
7	SPARKS	3kb3b	0.146	0.959	0.612	threading_7	MLLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERRQVQWDKVFTSCFLTVDGEIEGKIGRAVVSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSIGDRYLKPYVIPEPEVTFMPRSREDECLILA---SDGLWDVMN-------NQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYSMLALQKGSKDNIS
8	PROSPECT2	2shpa1	0.085	0.819	1.033	threading_8	TRINA--------AEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYK------------------------NILPFDHTRVVLHDSDYQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMNVKESAAHDYTLRELKPDHGVPSDPGGVLDFLEEVHHKQESIMDAIDIIREKGVDCDI------DVPKTIQMVRSVQHYIET------L
9	PPA-I	1ap8A	0.136	0.757	0.736	threading_9	-------------------------------------------------------MSVEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKTKPAVDKSESWSRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWED----EANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVIRKGGNKFALWTKSEDKEPLLRIGGKFKQVLKLTDDGHLE
10	HHPRED-l	2kmf_A	0.066	0.374	0.679	threading_10	LTGNYSQDTLTVIATLRQEVQDTARGQINDYISRYRRKGDAGGLKSTTMQTALNSLAGYYTSYG-ARPIP-----EKLKK-------------------------------RLQLEFTQAERS-----IER-GV-------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.608 to 1us4A SCOP code=c.94.1.1	TM-score=0.532 to 1ds0A SCOP code=b.82.2.2	TM-score=0.651 to 1s8eA SCOP code=d.159.1.4	TM-score=0.756 to 3akyA SCOP code=c.37.1.1	TM-score=0.410 to 1z0jB SCOP code=a.2.19.1