Template-based Modeling Results for YAGG_ECOLI

Submitted Primary Sequence

>Length 460
MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGDEQVGYFGAMCVLGLSGVVLLYVCFFTTKERYTFEVQPGSSVAKDLKLLLGNSQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELATQFLLYGSLATMFGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSLYKLTDARVEAISRQLIKHRAAQGEAVPDAATAASH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGDEQVGYFGAMCVLGLSGVVLLYVCFFTTKERYTFEVQPGSSVAKDLKLLLGNSQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELATQFLLYGSLATMFGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSLYKLTDARVEAISRQLIKHRAAQGEAVPDAATAASH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGDEQVGYFGAMCVLGLSGVVLLYVCFFTTKERYTFEVQPGSSVAKDLKLLLGNSQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELATQFLLYGSLATMFGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSLYKLTDARVEAISRQLIKHRAAQGEAVPDAATAASH
5542322110000001000000000000000000010010110000000000100100000000000121314213120000000000000000000012111101000000000000000000000000000201222311210100110000000000000000001101322331000000000000000000000112334222323322201200210111121000000100000000010000000021011122001100000000000000000200120110000000000000000000001131000000000000000100000000000101112212112222000000000011001000000000001003111212222230110010000000000000000001103023210320032023124333322232222245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGDEQVGYFGAMCVLGLSGVVLLYVCFFTTKERYTFEVQPGSSVAKDLKLLLGNSQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELATQFLLYGSLATMFGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSLYKLTDARVEAISRQLIKHRAAQGEAVPDAATAASH
1	MUSTER	1pv6A	0.129	0.876	1.406	threading_1	MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL----GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGIYLGFCFNAGAPAVEAFIEKVSRRSN-----FGRARMFGCVGWALGASIVGIMFTIN-------NQFVFWLGSGCALILAVLLFFAKTATVANAVGANHSAFLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE-------VRFSATIYLVCFCFKQLAMIFMSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLS----GPGPLSLLRRQVNEVA----------------
2	SPARKS	1pv6a	0.142	0.887	2.377	threading_2	MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YLLWIITGMLVMFAPFFIFIFGPLLQYNI-LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFGRARMFG-CVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSALKLALELFRQPKLWFLSLYVIGVSCTYDVFDQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFE-------VRFSATIYLVCCFFKQLAMIFMSVLAGNMYESIG---------------FQGAYLVLGLVALGFTLISVFTLS-GPGPLSLLRRQVNEVA----------------
3	PROSPECT2	1pw4A	0.134	0.876	2.363	threading_3	LPAAEIDPTYRR----LRWQIFLGIFFGYAAYYLVRKQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-----FLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH------AALYMPAFCAILVALFAFASCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-------DFFGWDGGFMVMIGGSILAVILLIVV-----------------MIGEKRRHEQLLQELVP--------
4	PPA-I	1pv6A	0.114	0.898	1.652	threading_4	MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL----GLRKYLLWIITGMLVMFAPFFIF---IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE------VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA--------------------
5	HHPRED-l	3o7q_A	0.104	0.839	4.664	threading_5	--RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAG-IITGLFLYALGAALFAEIMN------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHSLVLSVQTPYMIIVAIVLLVALLILTKFPALQSDNHDKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFI-VMTIIGGGIVTPVMGFVSDAGNIPTA----------------ELIPALCFAVIFIFARFRSQT-------------------------------
6	HHPRED-g	3o7q_A	0.104	0.839	4.321	threading_6	--RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK----LSY-KAGIITGLFLYALGAALFAEIMN------YTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHSLVLSVQTPYMIIVAIVLLVALLILTKFPALQSDNHDKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLG-------QD-TKYGSSFI-VMTIIGGGIVTPVMGFVSDAGNIPTA----------------ELIPALCFAVIFIFARFRSQT-------------------------------
7	SP3	1pw4a	0.128	0.883	2.364	threading_7	LPAAEIDPTYRRLRWQIFLGIFFGYAAYYFALAMPYLQGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSN-PRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN------DWHAALYMPAFCAILVALFAFAMMRDTPQSCGKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWD------------GGFMVMIGGSILAVILLIVVMIGE---KRRHEQLLQELVP------------------
8	SAM-T99	1pw4A	0.148	0.867	1.178	threading_8	-RRLRWQIFLGIFFGYAAYYLVRKNFA--LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF----GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND------WHAALYMPAFCAILVALFAFAMMRDTPQPIEEKNDTAKQIFMQYLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP-------KKAAGTAAGFTGFGYLGGSVAASAIVGYTVDFFGWDGGFM------------VMIGGSILAVILLIVVMIGEK---RRHEQLLQEL--------------------
9	MUSTER	1pw4A	0.126	0.880	1.405	threading_9	LPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSN--RVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVH---SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND----HAALYMPAFCAILVALFAFAMMRDTPQSCIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFG------------WDGGFMVMIGGSILAVILLIVVMIG---EKRRHEQL----------LQELVP--------
10	SPARKS	1pw4a	0.133	0.883	2.285	threading_10	LPAAEIDPTYRRLRWQIFLGIFFGYAAYYLFALAMPYLGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP-----RVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH------AALYMPAFCAILVALFAFAMMRDTPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWD-----------GGFMVMIGGSILAVILLIVVMIG----EKRRHEQLLQELVP------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.912 to 1pv6A SCOP code=f.38.1.2	TM-score=0.939 to 1pv6A SCOP code=f.38.1.2	TM-score=0.920 to 1pv6A SCOP code=f.38.1.2	TM-score=0.855 to 1pw4A SCOP code=f.38.1.1	TM-score=0.939 to 1pv6A SCOP code=f.38.1.2