Template-based Modeling Results for YAGA_ECOLI

Submitted Primary Sequence

>Length 384
MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEECHHHCCCEEEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
543211232312121112001102432020210042020102001200210233122212332322332234223200200220123133100220020013222221112100100132212222222232223132311220000002000012101000000001111100000012424230012001000231111110001112211322000100120034110200102222122201012002101211221321220210120022012111131013002210001112211331113223231330100120232020102100010021022120101213331201001120200001134432322432
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
1	MUSTER	1bcmA	0.163	0.622	0.888	threading_1	---------------------------------------------------------------------------------------------------------------------------------------VEHLDAMQWINGDGY-VRWFNGDVIKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEHITIDNTRGAANKWLTGGAPKGLFLLMGAKMHWTSVVAGKGWGQAERAFGVGGLEVDKHPALADAELFLKTLAEGVAMFNARTGRET-GKLSFDDVFEREYARTIVRKPTEEQKRMLEAVNVSRKGEFTLKAKNVYYNMALMVKKVVVRFDPQQ-------LHSTVYCYTLDGRFICEAE-C
2	SPARKS	3oy9a	0.130	0.820	2.035	threading_2	---------------------------------------LDAELDQLLQGHYIKGYPKQYTKVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATLLKIA-NLYWWPNRKDVVKQLGRCQTNASNKASGPILRPDRPQKPFDKFFIDYIGPPPSQGYL-YVLVVVDGMTGFTWLYPT-KAPSTSATVKSLNVLTSI-AIPKVIHSDQGAAFT-----SSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLV-GRPTKWYDLLPVVQLALNNT-YSPVLK-YTPHQLLFGIDSNTPFAN--------------QDTLDLTREEELSLLQEIRTSLYHPSTPPASSRSWSPVVGQ----LVQERVARPASLRPR
3	PROSPECT2	3hosA	0.142	0.734	2.068	threading_3	----VPNK-----EQTRTVLIFCFHLKKTAAESHRMLVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYE------DAELQALLDEDDAQTQKQLA------EQLEVSQQAVSNRLREMGKIQKVGRWVPHELNKRKSFLHRIVTGDEKWIFFRFGKKTMLCVWWDQSGVIYYELLKPGTVNAARYQQQLINLNRAPEYRVIFLHDNAPSHTA-----RAVRDTLETLNWEVLPHAAYSPDLAP-SDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGI--HKLPERWEKCVASDGKYFE-------------------------------------------------------------------------
4	PPA-I	3hotA	0.124	0.734	1.511	threading_4	---------VPNKEQTRTVLIFCFHLKKTAAESHRMLVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYE------DAELQALLDEDDAQTQKQLAEQL------EVSQQAVSNRLREMGKIQKVGRWVPHELNEKSFLHRIVTGDEKWIFPNRFGKKTMLCVWWDQSGVIYYELLPGETVNAARYQQQLINLNRALQHRVIFLHDNAPSHTA-----RAVRDTLETLNWEVLPHAAYSPDLA-PSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE---------------------------------------------------------------------------
5	HHPRED-l	1bco_A	0.135	0.617	2.715	threading_5	----------------------------------------------------------------------------------------------------------------------------------------EHLDAMQWINGDGYLHFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDITIDNTRGAANKWLKEDDPKGLFLLMGAKMHWTSVVAGKGWGQVERAFGVGGLEEYVGDRAVDAELFLKTLAEGVAMFN-ARTGRETGKLSFDDVFEREYARTIVKPTEEQLLLPAEAVNVSRKGELKGAKNVYYNMANAGVKKVVVRFDPQQSTVYCYTDGRFICEAECL----------
6	HHPRED-g	1c6v_A	0.142	0.385	3.032	threading_6	------------------------------------------------------------------------------------------------------------------------------------------NSDLGTWQMDCTHL---EG-K-IVIVAVHVASGFIEA-EVIPQETGRQTALFLLKLAGRWPIT-HLHTDNGANFAS-----QEVKMVAWWAGIEHTFG-----------EAMNHHLKNQIDRI--REQANSVETIVLMAVHCMNH-KRRGGIGDMTPAERLINMITTEQE----IQFQ--------------------------------------------------------------------
7	SP3	3os0a	0.130	0.862	2.095	threading_7	----------------AELDQLLQGHYIK--------GYPKQYTYFLKVKV-------SRPEGVKII-----PPQSDRQKIVLQAHNLAHTGREATLLKIA-NLYWWPNMRKDVVKQLGRITNASNKASGPILRPDRPQKPFDKFFIDYIGPPPSQGYL-YVLVVVDGMTGFTWLYPT-KAPSTSATVKSLNVLT-SIAIPKVIHSDQGAAFT-----SSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLT-KLLVGRPTKWYDLLPVVQLALNNT-YSPVLK-YTPHQLLFGIDSNTPFANQLTREEELSLLQEIRTSLYHPSTPPASSRSWSPVGQLVQER-VARPATVLKVLNPRTVVILDHLGNNRT----V
8	SAM-T99	3l2rA	0.170	0.490	2.734	threading_8	-------------------------------------------------------------KVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKPILRPDRPKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFT-WLYPTKAPSTSATVKSLNVLTSIA-IPKVIHSDQGAAFTSS-----TFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKR--------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3hotA	0.156	0.734	0.877	threading_9	----VPNK----EQTRTVLIFCFHL-KKTAAESHRMLVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYE------DAELQALLDEDDAQTQKQLAEQLE------VSQQAVSNRLREMGKIQKVGRWVPHELNERQSFLHRIVTGDEKWIFFVNGKKTMLCVWWDQSGVIYYELLKPETVNAARYQQQLINLNRALQRPEIFLHDNAPSHTA-----RAVRDTLETLNWEVLPHAAYSPDLA-PSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGI--HKLPERWEKCVASDGKYFE-------------------------------------------------------------------------
10	SPARKS	3os0a	0.126	0.805	2.013	threading_10	---------------------------------------------AELDQLLQGHYIKGYPKQYRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATLLKIA-NLYWWPNRKDVVKQLGRCQTNASNKASGPILRPDRPQKPFDKFFIDYIGPPPSQGYL-YVLVVVDGMTGFTWLYPT-KAPSTSATVKSLNVL-TSIAIPKVIHSDQGAAFT-----SSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLV-GRPTKWYDLLPVVQLALNNT-YSPVLK-YTPHQLLFGIDSNTPFAN--------------QDTLDLTREEELSLLQEIRTSLYHPSTPPASSRSWSPVVGQ----LVQERVARPASLRPR

Predicted Tertiary Structure


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TM-score=0.633 to 1bcmA SCOP code=b.48.1.1	TM-score=0.469 to 1c0mC SCOP code=b.34.7.1	TM-score=0.607 to 1c0mC SCOP code=b.34.7.1	TM-score=0.489 to 1c0mC SCOP code=b.34.7.1	TM-score=0.487 to 1c0mC SCOP code=b.34.7.1