Template-based Modeling Results for YAFS_ECOLI

Submitted Primary Sequence

>Length 240
MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA
CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCEEEEECHHHHCCCHHHHHHHHHHHEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA
533242232111021002010020022001200131023020000030021013010300000010201231110000000220112230000000000011021133002101200123010000011211110012002103422211121010110020023040201201100001213200200211010010000000112112222321332233231231211243244345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA
1	MUSTER	2gs9A	0.221	0.829	1.637	threading_1	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPALAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAARFLAREDLKALLGPPE---AEGEAVFLAPEAHPPYEEADLAGRRAGNPALYLGRWR---------------------------------
2	SPARKS	2gs9a	0.223	0.821	2.515	threading_2	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPALAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWQARFLAREDLKALL---GPPEAEGEAVFLAPEAHPPYEEADLAGRRAGALYLGRWR-----------------------------------
3	PROSPECT2	2gs9A	0.235	0.817	2.118	threading_3	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRALAVGRRR----APEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAARFLAREDLKALLGPPEAEGEAVFLAPEAHPPYEEADLAGRRAGNRPALYLGRWR-----------------------------------
4	PPA-I	2gs9A	0.220	0.833	2.348	threading_4	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPALAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWQARFLAREDLKALLGPPEAEGEAVFLAPEAHPPYEEADLAGRRAGNRPALYLGRWR-----------------------------------
5	HHPRED-l	2gs9_A	0.227	0.825	2.147	threading_5	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLPY-PQKVGVERAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWQARFLAREDLKALLGPPEAEGEAVFLAPAHPPYEEADLAGRRAGNR-PALY--LGRWR---------------------------------
6	HHPRED-g	2gs9_A	0.232	0.825	2.323	threading_6	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLP-YPQKVGVEPSEEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWQARFLAREDLKALLGPPEAEGEAVFLAPEHPPYEEADLAGRRAG-NRPALYL--GRWR---------------------------------
7	SP3	2gs9a	0.226	0.812	2.545	threading_7	PFASLAEA----YEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYW-LRRLPYPQAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWQARFLAREDLKALLGPPEAEGEA---VFLAPEAHPPYEEADLAGRRAGALYLGRWR-----------------------------------
8	SAM-T99	2gs9A	0.213	0.783	2.688	threading_8	---DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRL-PYPQKVGVEPSEALAWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLWAQARFLAREDLKALLGPPEAEGEAVFLAPEAHPYEEADLAGRRAGN----------------------------------------------
9	MUSTER	1vlmA	0.172	0.800	1.376	threading_9	------HWHINEYERWF--LVHRFAYLSELQAVKCLLP---EGRGVEIGVGTGRFAVPLKIPSERAEIARKRGVFVLKGTAENLPLKDESFDFALV-TTICFVDDPERALKEAYRILKKGGYLIVGIVDRES-FLGREYEKNKEKVFYKNARFFSTEEL--DLRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGEGAFVVIRGTKK---------------------------------
10	SPARKS	3g5la	0.119	0.771	2.085	threading_10	---------------------EGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPM--MLLISATKQE--------------------------------

Predicted Tertiary Structure


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TM-score=0.768 to 1vlmA SCOP code=c.66.1.41	TM-score=0.748 to 1vlmA SCOP code=c.66.1.41	TM-score=0.771 to 1vlmA SCOP code=c.66.1.41	TM-score=0.742 to 1vlmA SCOP code=c.66.1.41	TM-score=0.771 to 1vlmA SCOP code=c.66.1.41