Template-based Modeling Results for YAFM_ECOLI

Submitted Primary Sequence

>Length 165
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS
553222222420000000002222221122112001100120133220100000001320000010132333011002102200021002322121202100022130021001001100121112330221200100100121111020002222212112013
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS
1	MUSTER	2vihA	0.129	0.842	1.263	threading_1	VLKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPS-FGVMKFIKTAKGRSSRILRLPTLWTNSCFISTV-GGAPLNVVKQYIEN---NSNRPKQKEKWK--SYVDNLQTKAL-------------------
2	SPARKS	2fyxa	0.133	0.727	1.642	threading_2	-MKKGRGYVYKLEYHLIWATKYRHQVLVDEVADGLKDILRDIATQNGLELVALEVMPDYVHLLLGATPQ-HVIPDFVKALKGASARRMLKQPHWGGNLWNPCVLTEHTRAQIQQYIE-NQHAA------------------------------------------
3	PROSPECT2	2f4fA	0.163	0.745	1.080	threading_3	ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVN-CPPRYAPSYLANYFKGKSARLLNKGKLWTRSYFVATAGNVSS-EVIKKYIEEQWRKEG----------------------------------------E
4	PPA-I	2a6oA	0.113	0.855	1.386	threading_4	LYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPS-FGVMKFIKTAKGRSSRILKLPTLWTNSCFISTVGG-APLNVVKQYIENQ------QNSNRPKQKEKWKSYVDNLQTKAL----------------
5	HHPRED-l	2vjv_A	0.123	0.691	5.529	threading_5	--KSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDP-SFGVMKFIKTAKGRSSRILRQPTLWTNSCFISTVGG-APLNVVKQYIEN-----------------------------------------------
6	HHPRED-g	2vjv_A	0.123	0.691	5.350	threading_6	--LSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPS-FGVMKFIKTAKGRSSRILRQPTLWTNSCFISTVGG-APLNVVKQYIEN-----------------------------------------------
7	SP3	2f4fa	0.164	0.739	1.631	threading_7	L-KSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPP-RYAPSYLANYFKGKSARLINKGKLWTRSYFVATA-GNVSSEVIKKYIEEQWRKEGE----------------------------------------
8	SAM-T99	2fyxA	0.148	0.697	1.886	threading_8	MK-KGRGYVYKLEYHLIWATKYRHQVLVDEVADGLKDILRDIATQNGLELVALEVMPDYVHLLLG-ATPQHVIPDFVKALKGASARRMFSANLWNPSYCVLTV-SEHTRAQIQQYIEN-----------------------------------------------
9	MUSTER	2a6oA	0.107	0.848	1.257	threading_9	V-KSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPS-FGVMKFIKTAKGRSSRILRQPTLWTNSCFISTVGG-APLNVVKQYIENQ------QNSNRPKQKEKWKSYVD------NLQTKAL----------
10	SPARKS	2f4fa	0.163	0.745	1.635	threading_10	ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPR-YAPSYLANYFKGKSARLINKGKLWTRSYFVATA-GNVSSEVIKKYIEEQWRKEGE----------------------------------------

Predicted Tertiary Structure


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TM-score=0.821 to 2vihA SCOP code=d.58.57.1	TM-score=0.829 to 2vihA SCOP code=d.58.57.1	TM-score=0.770 to 2fyxA SCOP code=d.58.57.1	TM-score=0.684 to 2a6oA SCOP code=d.58.57.1	TM-score=0.857 to 2a6oA SCOP code=d.58.57.1