Template-based Modeling Results for YAFK_ECOLI

Submitted Primary Sequence

>Length 246
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCEEEHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
441100000000000000000011122222123312322222100000023321010122224321100102001121221233331223003000001232232213001000000011102120232210000021012000001130022002002102221232020000213123210332321301200210120021023133212010122200013222332231321132223428
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
1	PROSPECT2	1bhga3	0.071	0.915	1.147	threading_1	FDWPLLVKDFNLLRWLGANAF--RTSHYPYAEEVMQMCDRYGIVVIDECPGVGVMEEVVRRDKNHPAVVMWSVANEPASHLESAKSLDPSRP-VTFVSNSNYAADKG------------------APYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQR
2	SPARKS	1zata	0.118	0.618	1.602	threading_2	YSWTIQTDSETEALKKAILAGQDFTRSPIVQGGTTADHPLIEDTYIEVDLENQHMWYY----KDGKVALETDIVSGKPT---------TPTPAGVFYVWNKEEDATLKGTN--GTPYESPVNYWMPIDWTGVGIHDSDWSHGCINTPPSVMKELFGMVE-------KGTPVLVF------------------------------------------------------------------------
3	PROSPECT2	1de4c3	0.104	0.898	1.140	threading_3	LYWDDLKRKLSEKLFTSTIKLLNENSYVPREAENQFREFKLSKVWRDQHFVKEILNIFGVIKGFVEPDHYVVVGAQRDAWGPDMVLKDGFQPSRSIIF------------ASWSAGDFGEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDN---------AAFPFLAYSGIPAVSF----CFCEDTDYPYLGTTMDTYKEHDVELN
4	PROSPECT2	1zatA2	0.147	0.524	1.238	threading_4	DTKF-----------------------KSTKRGEVTVPVGTYDTYIEVDLENQHMWYY----KDGKVALETDIVSGK---------PTTPTPAGVFYVWNKEED--ATLKGTNGTPYESPVNYWMPIDWTGVGIHDSDGSHGCINTPPSVMKELFGMV-------EKGTPVLVF------------------------------------------------------------------------
5	MUSTER	1zatA2	0.163	0.524	0.990	threading_5	-----------------------DTKFKSTKRGEVTVPVGTYDTYIEVDLENQHMWYYK----DGKVALETDIVSGKPT---------TPTPAGVFYVWNKEEDATLKGTNGTPYESPVNYWMPIDWTG--VGIHDTRGSHGCINTPPSVMKELFGMVE-------KGTPVLVF------------------------------------------------------------------------
6	PPA-I	1zatA2	0.155	0.524	1.922	threading_6	-----------------------DTKFKSTKRGEVTVPVGTYDTYIEVDLENQHMWYYK----DGKVALETDIVSGKPT---------TPTPAGVFYVWNKEEDATLKGTNGTPYESPVNY--WMPIDWTGVGIHDSDWSHGCINTPPSVMKELFGMV-------EKGTPVLVF------------------------------------------------------------------------
7	HHPRED-l	1zat_A	0.145	0.589	3.620	threading_7	IQTDS-ETEALKK-AILA-GQD---FTRSPIVQGADHPLIE-DTYIEVDLENQHMWYYKDG----KVALETDIVSGKP---------TTPTPAGVFYVWNKEEDATLKGTN--GTPYESPVNYWMPIDWTGVGIHDSDWSHGCINTPPSVMKELFGMVE-------KGTPVLVF------------------------------------------------------------------------
8	HHPRED-g	1y7m_A	0.193	0.569	3.749	threading_8	KQGDTLNSIAADFR-ISTAALLQANPSLQAGLIPGLPDPYTIPYHIAVSIGAKTLTLSLNN----RV-KTYPIAVGKI---------LTQTPTGEFYIINRQRNPGGPFAYWLSL------------SAAHYGIHGTNVSKGCIR-HNKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
9	SP3	1y7ma	0.199	0.573	1.184	threading_9	VKQGDTLNSIAADFRISTAALLQANPSLQAIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNN-----RVKTYPIAVGKI---------LTQTPTGEFYIINRQRNPGGPFGYWLSLSAA------------HYGIHGKAVSKGCIRH-NKDVIELASIVP-------NGTRVTINR-----------------------------------------------------------------------
10	SAM-T99	1y7mA	0.247	0.394	2.039	threading_10	------------------------------------------PYHIAVSIGAKTLTLSL-----NNRVKTYPIAVGKIL---------TQTPTGEFYIINRQGGPFGAYWLSLSAA--------------HYGIHGTNVSKGCIR-HNKDVIELASIVPNG-------TRVTINR-----------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.667 to 1zatA SCOP code=b.160.1.1	TM-score=0.828 to 1bhgA SCOP code=b.1.4.1	TM-score=0.589 to 1zatA SCOP code=b.160.1.1	TM-score=0.652 to 1suvA SCOP code=i.21.1.1	TM-score=0.676 to 1zatA SCOP code=b.160.1.1