Template-based Modeling Results for YAFD_ECOLI

Submitted Primary Sequence

>Length 266
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK
CCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCHHHCCCEECCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCEEEEEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK
55442100110022113211220111111321221222233320100000013322220120031104312000011032233012002111100220210112311000000011210100212322121222300000102024232000000000002112320030022002002322010000000211133002001200340212201123332220112100000011020110200324112100000101134467
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK
1	MUSTER	3g6sA	0.142	0.820	1.502	threading_1	----------------------------------------KTDVRWATFNIRYDNPQDKDRVCQFIKDELD-IVGQEVL-HNQFQDLRAGPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLPDSVGGWDAVCVRIATWAKFKDKATGKIFAVNTHFDHVG--EEARRQSALLIIRKIKEIERPAVVTGDFNVTDADAYETITTAYKTAARVTGVHDFARIPAEDCEKIDFIFVPQVLVKSCEIPAEVLSDHNPQLADLELE----
2	SPARKS	3mpra	0.143	0.838	2.957	threading_2	-------------------------------------SYQPTSLTVASYNLRNANRGDGWGQRYPVIADFDIFGTQECF-LHQLKDKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVDVPSKGWDAVLPRICSWGHFKCKDGFEFLFFNL---HDHIGKKARVESAFLVQEKKELGRGPAILTGDFNVDQTH--QSYDAFVSKGVLCDSYEKCDDPNSFTESRIDHIFVSSFHVKRYGVLTDTPSDHFPVKVELVFDLEHH
3	PROSPECT2	1vybA	0.156	0.793	2.193	threading_3	--------------------------------------GSNSHITILTLNINGLNSAIKRHRLASWIKDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTK-------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTG----APRFIKQVLSDLQRDLDSHTLIMGDFNTPVNKDTQELNSALHQADLIDIYRTLHPKSTEYTSKIDHIVGSKSKCKRTEIITNYLSDHSAIKLEL------R
4	PPA-I	3g6sA	0.157	0.816	1.960	threading_4	----------------------------------------KTDVRWATFNIRYDNPQDKDRVCQFIKDELD-IVGQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLPDSVGGWDAVCVRIATWAKFKDKATGKIFAVNTHFDHVG--EEARRQSALLIIRKIKEIERPAVVTGDFNVTDAS--DAYETITTNEFVKDAYKTAARIPAEDCEKIDFIFVPQVLVKSCEIPEALLSDHNPQLADLELE----
5	HHPRED-l	3mpr_A	0.155	0.823	3.180	threading_5	-------------------------------------SYQPTSLTVASYNLRNANGSDSYPVIAQ-VQDFDIFGTQECFLHQ-LKD-KEALGYDYIGVGRDDGKDKGEHSAIFDKFDIVEKGDFWLSEPDAVLPRICSWGHFKCKTGFEFLFFNLH-DHI--GKKARVESAFLVQEK-KEKNLPAILTGDFNVDQTHQSY--DAFVSKGVLCDSALNGTFNNFDTESRIDHIFVSSFHVKRYGVLTDTPSDHFPVKVELVFDLEH-
6	HHPRED-g	3teb_A	0.153	0.759	3.063	threading_6	--------------------------------------------KILTVNVHAWLEENQ-EKIDILAKQYDVIA-QEVNQL-VLLETLQKYTTDYYLHWSIGFGKYNEGVAVITRHKIKAEDEFYCTFAQTISARRIVSITINYE-GQDIEFYSCH-NLPNCETED-GKNIQTILNRTQN-SNLKIL-GDFNTDAIGNVAAYENILDTYV-AEKKD------DKAKKRLDYIFSNKLKVKESKVINEIVSDHFGIEVKIEF-----
7	SP3	3mpra	0.139	0.838	3.049	threading_7	-------------------------------------SYQPTSLTVASYNLRNANGSDSWGQRYPVIADFDIFGTQECF-LHQLKDKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVDVPSKGWDAVLPRICSWGHFKCKTGFEFLFFNLH---DHIGKKARVESAFLVQEKKELGRGPAILTGDFNVDQTH--QSYDAFVSKGVLCDSYEKCDDPNSFTESRIDHIFVSSFHVKRYGVLTDTPSDHFPVKVELVFDLEHH
8	SAM-T99	3fziA	0.196	0.805	2.570	threading_8	-----------------------------------------AVLKIISWNVNGLRAVHKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTE------GRIQIADFDDFLLYNIYFPNGKMSEERKLEFYDAFLEDVNRDSGNVIICGDFNTAHRERA--WIDKFIENGYVDTFTWWSYRTRARGWRLDYFFVNEFKVKRSWILDVMGSDHCPIGLEIELLE---
9	MUSTER	3mprA	0.142	0.846	1.462	threading_9	-------------------------------------SYQPTSLTVASYNLRNANGDGWGQRYPVIAQDFDIFGTQECF-LHQLKDKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEVPSKGWDAVLPRICSWGHFKCKDGFEFLFFNLH---DHIGKKARVESAFLVQELGRGKNLPAILTGDFNVDQTQSYDAFVSSYEKCDYRYALFNNFDPNSFTESRIDHIFVSSFHVKRYGVLTDTPSDHFPVKVELVFDLEHH
10	SPARKS	3fzia	0.180	0.793	2.507	threading_10	-----------------------------------------AVLKIISWNVRAVHRKGFLKWFMEE--KPDILCLQEIKAAPEQRKLRHVEGYRSFFTPA--ERKGYSGVAMYTKVPPSSLREGFGVERFDTEGR-IQIADF-----DDFLLYNIYFPNGKMSLKYKLEFYDAFLEDVNREGRNVIICGDFNGFLPVERAWIDKFIE-NGYVDTFRMFNSDPGQYGWRLDYFFVNEFKVKRSWILSDMGSDHCPIGLEIELLE---

Predicted Tertiary Structure


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TM-score=0.667 to 1wduB SCOP code=d.151.1.1	TM-score=0.660 to 1wduB SCOP code=d.151.1.1	TM-score=0.661 to 1wduB SCOP code=d.151.1.1	TM-score=0.698 to 1wduB SCOP code=d.151.1.1	TM-score=0.692 to 1wduB SCOP code=d.151.1.1