Template-based Modeling Results for YAEF_ECOLI

Submitted Primary Sequence

>Length 274
MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEECCCCCCHHHHCCEECCHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCEEEEEHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCEEECCCCCCCHHCCCEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
5521310021000000000002120322211211012104212021323222233212202132033000000202010010031012120000000002100010122101002032113322200001123023310210010014223221113000100010002300212101330121001000102112223234311000200020024021301212212001110021220112102132202000202100113102011235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
1	MUSTER	2if6A	0.192	0.628	1.011	threading_1	--------------------------------------------------------------WQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNYVFEA-VGPVKYTPLKQWIAEKGKYVVRRVEGLSVEQQQKLAQTAKRYLGKPYDFS------------SWSDDRQYCSEVVWKVYQNALGMRVGEQKEFDLSN---PLVQAKLKERYGKNIPLEETV-VSPQAVFDAP-----------QLTTV-AKEWPLF-----------
2	PROSPECT2	2if6A	0.167	0.613	1.915	threading_2	WQ--------------------------------------------------------------PQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVNKKPYVFEAVGPVKYTPLKQWIAHGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYD----------------------------------------FSFSWSDDRQYCSEVVWKVYQNA----LGMRVGEQQKLKEFDLSNPLVQAKKNIPLEETVVSPQAVFDAPQLTTVAPLF
3	SPARKS	2k1ga	0.171	0.449	2.399	threading_3	VDVKSRIMDQYA-DWKYRLGGSTK-KGIDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRA------------GSTGRHVGIYIGNNQFVHASTSGVIISSMNEPYWKKRYNEARRVLSRSLE-----------------------------------------------------------------------------------------------------------------------------------------
4	PPA-I	2if6A	0.165	0.642	1.665	threading_4	--------------------------------------------------------------WQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNYVFEAVG-PVKYTPLKQWIAKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYDFSF-----------SWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLVQAKLKERYGKNIPLEETV-VSPQAVFDAP-----------QLTTVAKEWPLF------------
5	HHPRED-l	3kw0_A	0.248	0.602	4.257	threading_5	-------------------------------------------------GTDKFNNIKIDKINVLKTGDIFLCSGNYLVSKLIKKVSES-FSHTGIIVKWGLI-ESVEDGVRIVPLEHYIKNYGSLFIARHVNDDSE-IRNLIKVGFSLLNSGYDKNEIAQIVA--------------------------RIGLGIGRHEDNNEYICSEFVNECFKKIGVEFL-----FIFPEHIAADHHVLPIAQIE--------------------------
6	HHPRED-g	2hbw_A	0.211	0.449	3.359	threading_6	LPGAIAFTA-QQSNYYLWGG--TVGPNYDCSGL-QAAFVS-VGIWLPRDAYQQEAFTQAITIDELAPGDLVFFGTPV------------KATHVGLYLGDGCYIHSSGDGIGIDILSEQSYYQQLRGAGRVVKSYKPQRH--------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	3kw0A	0.210	0.609	1.616	threading_7	-------------------------------------------------GTDKFNNIKIDKYENLKTGDIFLCSGNYLVSKLIKKVSES-FSHTGIIVKWGEHTLVEDDGVRIVPLEHYINRYNGSLFILQNVNDDSEIRNLIKVGFSLLNSGYD--------------------------KNEIAQIVARIGLGIGRHEDNNEYICSEFVNECFKKIGVEFLF-----IFPEHIA-----------ADHHVLPIAQI---------------E
8	SP3	2jyxa	0.180	0.445	2.366	threading_8	VDVKSRIMDQYADRYRL--GGSTK-KGIDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRA------------GSTGRHVGIYIGNNQFVHASSSGVIISSMNEPYWKKRYNEARRVLSRSLE-----------------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-l	2if6_A	0.243	0.540	3.312	threading_9	--------------------------------------------------------------WQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKVFEAV-GPVKYTPLKQWIAHGEKYVVRRVEGLSVEQQQKLAQTAKRYLGKPYDFSF----------------------------------------SWSDDRQYCSEVVWKVYQNAGMRVGEQQKLQVSPQAVFDAPQLTTVAK--E----WP------LF-----------
10	SAM-T99	2k1gA	0.183	0.438	4.115	threading_10	KSRIMDQYADWKGVRYRLGGSTKK---GIDCSGFVQRTFREFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRSTGR--------------HVGIYIGNNQFVHASSSGVIISSMNEPYWKKRYNEARRVLSRSLE-----------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.769 to 2if6A SCOP code=d.3.1.21	TM-score=0.409 to 2iobB SCOP code=c.30.1.7	TM-score=0.748 to 2if6A SCOP code=d.3.1.21	TM-score=0.412 to 2iobB SCOP code=c.30.1.7	TM-score=0.789 to 2if6A SCOP code=d.3.1.21