Template-based Modeling Results for YADN_ECOLI

Submitted Primary Sequence

>Length 194
MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATAGYVKTNTAYTITYQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATAGYVKTNTAYTITYQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCEEECCCCCHHHHEHHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATAGYVKTNTAYTITYQ
43311010000000000000001113201010201001010201122234301010320211201021133222232320000010140313322202001011111213110212221232020010000113133021021322232222111133420000010000212133211102020201020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATAGYVKTNTAYTITYQ
1	MUSTER	2jmrA	0.219	0.799	1.798	threading_1	------------------------MADSTITIRGYVRDNGCSVAAE--STNFTVDLMENAAKQFN----NIGATTPVVPFRILLSPCG---NAVSAVKVGFTGVADSHNANLLALE-NTVSAASGLGIQLLNEQQNQI---PLNAPSSALSWTTLTPGKPNTLNFYARLMATQV--PVTAGHINATATFTLEYQ
2	SPARKS	3jwne	0.214	0.794	3.465	threading_2	-------------------------ADSTITIRGYVRDNGCSVAAE--STNFTVDLMENAAKQFN----NIGATTPVVPFRILLSPCG---NAVSAVKVGFTGVADSHNANLLALENT-VSAAAGLGIQLLNEQQNQI---PLNAPSSALSWTTLTPGKPNTLNFYARLMATQ--VPVTAGHINATATFTLEYQ
3	PROSPECT2	2j2zB	0.153	0.773	1.742	threading_3	----------------------------RAAFHGEVVRPACTLAMEDAWQI--IDMGETPVRDLQ-----NGFSGPERKFSLRLRNCEFNSQGGNLFSDSRIRVTFDGVRGETPDKFNLSGQAKGINLQIADVRGNIARAGKVMPAIP-------LTGNEEALDYTLRIVR--NGKKLEAGNYFAVLGFRVDYE
4	PPA-I	2jmrA	0.206	0.799	2.542	threading_4	------------------------MADSTITIRGYVRDNGCSV--AAESTNFTVDLMENAAKQF----NNIGATTPVVPFRILLSPCGNAVSA---VKVGFTGVADSHNANLLALENT-VSAASGLGIQLLNEQQNQI---PLNAPSSALSWTTLTPGKPNTLNFYARLMATQVP--VTAGHINATATFTLEYQ
5	HHPRED-l	2jty_A	0.172	0.809	4.204	threading_5	--------------------AATTVNGGTVHFKGEVVNAACAVDAG--SVDQTVQLGQVRTASLAQE----GATSSAVGFNIQLNDCDTNV--ASKAAVAFLGTADAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATF-----SSETTLNNGTNTIPFQARYFATG---AATPGAANADATFKVQY-
6	HHPRED-g	2uy6_B	0.163	0.758	4.020	threading_6	----------------------------KVTFNNTVVDAPCSISQKS--ADQSIDFGQLSKSFLEA----GGV-SKPMDLDIELVNCDITAFKKGTVKLAFTGPIVNGHSDELDTN----GGTGL-AIVV-QGAGKNVVFDGSE------GDANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwne	0.214	0.794	3.456	threading_7	-------------------------ADSTITIRGYVRDNGCSVAAE--STNFTVDLMENAAKQF----NNIGATTPVVPFRILLSPCG---NAVSAVKVGFTGVADSHNANLLALENT-VSAAAGLGIQLLNEQQNQI---PLNAPSSALSWTTLTPGKPNTLNFYARLMATQV--PVTAGHINATATFTLEYQ
8	SAM-T99	2jtyA	0.181	0.799	3.470	threading_8	---------------------AATTVNGTVHFKGEVVNAACAV--DAGSVDQTVQLGQVRTASLA----QEGATSSAVGFNIQLDCDTNVAS---KAAVAFLGTAIDAGTNVLALQSSAAGSATNVGVQILDRTGAALTLD--GATFSS---ETTLNNGTNTIPFQARYFAT---GAATPGAANADATFKVQY-
9	MUSTER	2jtyA	0.203	0.814	1.777	threading_9	--------------------AATTVNGGTVHFKGEVVNAACAV--DAGSVDQTVQLGQVRTASLA----QEGATSSAVGFNIQLNDCDTN--VASKAAVAFLGTAIAGHTNVLALQSSAAGSATNVGVQILDRTGAALTL-----DGATFSSETTLNNGTNTIPFQARYFATGA---ATPGAANADATFKVQYQ
10	SPARKS	3jwng	0.146	0.742	3.037	threading_10	-------------------------ADVTITVNGKVVAKPCTVS----TTNATVDLGDLYSFSL----MSAGAASAWHDVALELTNCPVGT---SRVTASFSGAADST------GYYKNQGTAQNIQLELQDDSGNTLN------TGATKTVQVDDSSQSAHFPLQVRAL--TVNGGATQGTIQAVISITYTYS

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.671 to 1pdkB SCOP code=b.2.3.2	TM-score=0.829 to 2j2zB SCOP code=b.2.3.2	TM-score=0.691 to 1klfP SCOP code=b.2.3.2	TM-score=0.830 to 2j2zB SCOP code=b.2.3.2	TM-score=0.678 to 1pdkB SCOP code=b.2.3.2