Template-based Modeling Results for YADM_ECOLI

Submitted Primary Sequence

>Length 189
MIKTTPHKIVILMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALATFNFIYQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIKTTPHKIVILMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALATFNFIYQ
CCCEEHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCEEEECCCEEHHHEECCCCCCCCCEEEEEECCCCHHCEEEEEEECCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIKTTPHKIVILMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALATFNFIYQ
543111110000000000110112101010001022210101010222233223301020120003101242232312010001201221110201021221222220013221312221200000012222421210213112202011322323320100000221422300002020101020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIKTTPHKIVILMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALATFNFIYQ
1	MUSTER	2jmrA	0.201	0.815	2.113	threading_1	----------------------MADSTITIRGYVRDNGCSVA--------AESTNFTVDLMENAAKQFNNGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALE--NTVSAASGLGIQLLNEQQNQIPL--NAPSSALSWTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ
2	SPARKS	3jwne	0.196	0.810	3.980	threading_2	-----------------------ADSTITIRGYVRDNGCSVAA--------ESTNFTVDLMENAAKQFNNGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALE--NTVSAAAGLGIQLL--NEQQNQIPLNAPSSALSWTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ
3	PROSPECT2	2j2zB	0.148	0.751	1.599	threading_3	RAA--------------------------FHGEVVRPACTLA--------MEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFSDSRIRVTFDGVRGETPDKF------NLSGQAKGINLQIA---DVRGNIARAGKVMP---AIPLTGNEEALDYTLRIVRNG-KKLEAGNYFAVLGFRVDYE
4	PPA-I	2jmrA	0.195	0.815	2.884	threading_4	----------------------MADSTITIRGYVRDNGCSV--------AAESTNFTVDLMENAAKQFNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALE--NTVSAASGLGIQLLNEQQNQIPL--NAPSSALSWTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ
5	HHPRED-l	2uy6_B	0.155	0.751	4.032	threading_5	--------------------------KVTFNNTVVDAPCSISQKS--------ADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFTVKLAFTGPIVNGHSDELDT-----NGGTGL-AIVV-QGAGKNVVFD---GSEG--DANTLKDGENVLHYTAVVKKSVGAAVTEGAFSAVANFNLTY-
6	HHPRED-g	2uy6_B	0.155	0.751	3.972	threading_6	--------------------------KVTFNNTVVDAPCSISQK--------SADQSIDFGQLSKSFLEGGV-SKPMDLDIELVNCDITAFTVKLAFTGPIVNGHSDELDT-----NGGTGL-AIVV-QGAGKNVVFDGSEG-----DANTLKDGENVLHYTAVVKKSVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwne	0.196	0.810	3.948	threading_7	-----------------------ADSTITIRGYVRDNGCSVAA--------ESTNFTVDLMENAAKQFNNGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALE--NTVSAAAGLGIQLLNEQQNQIPLN--APSSALSWTTLTPGKPNTLNFYARLMAT-QVPVTAGHINATATFTLEYQ
8	SAM-T99	2jmrA	0.222	0.810	4.934	threading_8	M----------------------ADSTITIRGYVRDNGCSVAAE--------STNFTVDLMENAAKQFNNGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENT--VSAASGLGIQLLNEQQNQIPLNAPSSALS--WTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEY-
9	MUSTER	1pdkB	0.148	0.751	2.061	threading_9	---------------------------------LLDRPCHVS--------GDSLNKHVVFKTRASRDFWYPGRSPTESFVIRLENCHAVGKIVTLTFKGTEEAALPGHLKV----TGVNAGRLGIALLDTDGS--SLLKPGTSHNKGQGEKVTGNSLELPFGAYVVATPEKSVVPGDYEATATFELTYR
10	SPARKS	2jmra	0.201	0.815	3.494	threading_10	----------------------MADSTITIRGYVRDNGCSV--------AAESTNFTVDLMENAAKQFNNGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALE--NTVSAASGLGIQLLNEQQNQIPL--NAPSSALSWTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.676 to 1pdkB SCOP code=b.2.3.2	TM-score=0.668 to 1klfP SCOP code=b.2.3.2	TM-score=0.691 to 1klfP SCOP code=b.2.3.2	TM-score=0.774 to 2j2zB SCOP code=b.2.3.2	TM-score=0.675 to 1klfP SCOP code=b.2.3.2