Template-based Modeling Results for YADK_ECOLI

Submitted Primary Sequence

>Length 198
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCEEECCEEEHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
443212310210000000000000011122201010101211020112331101001000110222122322233122010100102231324211101010212212212213200112222202100000012332222110131222221001011331220102000000111212212202010201020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
1	MUSTER	2jmrA	0.183	0.773	1.776	threading_1	--------------------------MADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGAT----TPVVPFRILLSPCGNAVSA-----VKVGFT---GVADSHNANLLALETVSAASGLGIQLLNEQQNQIPLNAPSSALSWT-----TLTPGKPNTLNFYARLMAT--QVPVTAGHINATATFTLEYQ
2	SPARKS	3jwne	0.157	0.773	3.538	threading_2	---------------------------ADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGAT----TPVVPFRILLSPCGNAVS-----AVKVGFTGVADSHNANLLAL--ENTVSAAAGLGIQLLNEQQNQIPLNAPSSALS-----WTTLTPGKPNTLNFYARLMATQV--PVTAGHINATATFTLEYQ
3	PROSPECT2	2uy6B	0.122	0.747	1.773	threading_3	------------------------------KVTFNNTVVDAPCSISQSADQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFKGGKGTVKLAFT---GPIVNGHSDELD---TNGGTGLAIVVQGAGKNVVFDGSEGDANTL---------KDGENVLHYTAVVKKSSAVAAVTEGAFSAVANFNLTYQ
4	PPA-I	2j2zB	0.130	0.737	2.605	threading_4	------------------------------RAAFHGEVVRPACTLAMEDWQIIDMGETPVRDLQNGF-----SGPERKFSLRLRNCEFNSQGFSDSRIRVTFDGVRGETPDK------FNLSGQAKGINLQIADVRGNIARAGKVMPA---------IPLTGNEEALDYTLRIVRNG--KKLEAGNYFAVLGFRVDYE
5	HHPRED-l	2uy6_B	0.110	0.732	3.996	threading_5	------------------------------KVTFNNTVVDAPCSISQKADQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFK--KGTVKLAFTGPIVNG---HSDELDTN--GGTGL-AIVV-QGAGKNVVFDGSEGD--------ANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTY-
6	HHPRED-g	2uy6_B	0.116	0.737	3.950	threading_6	------------------------------KVTFNNTVVDAPCSISQKSDQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFK--KGTVKLAFTGPIVN---GHSDELDTN--GGTGL-AIVV-QGAGKNVVFDGSEGD--------ANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwne	0.184	0.768	3.399	threading_7	---------------------------ADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIG----ATTPVVPFRILLSPCGNAVS-----AVKVGFT---GVADSHNANLLALENVSAAAGLGIQLLNEQQNQIPLN-----APSSALSWTTLTPGKPNTLNFYARLMAT--QVPVTAGHINATATFTLEYQ
8	SAM-T99	2jmrA	0.184	0.768	3.944	threading_8	--------------------------MADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGATTPV----VPFRILLSPCGNAVSA---VKVGFTGV-----ADSHNANLLALENVSAASGLGIQLLNEQQNQ---IPLNAPSSALSWTTLTPGK--PNTLNFYARLMATQV--PVTAGHINATATFTLEY-
9	MUSTER	2jtyA	0.184	0.798	1.743	threading_9	----------------------AATTVNGGTVHFKGEVVNAACAVDAGSDQTVQLGQVRTASLAQEGAT----SSAVGFNIQLNDCDTN----VASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTL-----DGATFSSETTLNN--GTNTIPFQARYFATGA---ATPGAANADATFKVQYQ
10	SPARKS	2jtya	0.171	0.798	3.272	threading_10	----------------------AATTVNGGTVHFKGEVVNAACAVDAGVDQTVQLGQVRTASLAQEGAT----SSAVGFNIQLNDCDTNVAS----KAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSSE-------TTLNNGTNTIPFQARYFATG---AATPGAANADATFKVQYQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.670 to 1pdkB SCOP code=b.2.3.2	TM-score=0.664 to 1pdkB SCOP code=b.2.3.2	TM-score=0.656 to 1klfP SCOP code=b.2.3.2	TM-score=0.771 to 2uy7B SCOP code=b.2.3.2	TM-score=0.788 to 2j2zB SCOP code=b.2.3.2