Template-based Modeling Results for YADE_ECOLI

Submitted Primary Sequence

>Length 409
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
CHHHHHHHHHHHHHHCCHHCCCCCEEEECCCHHHHHHHCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEECCEEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
4121000000000010121113120010232020012003200100202322001001321100001001020001222133232434233102202232132301012202001132222220000132121200220234232211102102110001012223332000000000043332231422222001310230021034221100001101001323232211000000010132002100200331202000000001032222313122221110210120321110000101012021222210222133212210120230023123312000001011131002003411010000013131332322120200102322213100211242344
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
1	PROSPECT2	2c1gA	0.123	0.817	1.600	threading_1	FEQKIESLK----------------------KEKDDQLSEGNQKE-HFRQGQAEVIA-----YYPLQGEKVISSVRELINQDVKDKLESKDNLEQEESGLKGVVNRNVTKQIYDLVAFKIEETKVHLTEDGQPFTLDQLFSD------------------------ASKAKEQLIKELTSFWNFDYKDSQIILYEIALPVS--AFFDVIQSSYLLEKDAALYQSYFDKKHQKVVALTFDDGPNPTTPQVLETLAKYDIKATFFVLGKNVSG-------------NEDLVKRISEGHVVGNHSWSHPI--------LSQLSLDEAKKQITDTEDVLTKVGSSSKLMRPPYGAITDDIRNSLDLSFIMWDVDSLDWKSKNQVANGSIVLMHDIHSPTVNALPRVIEYSRDE
2	SPARKS	1ny1a	0.151	0.487	1.556	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPNEPINWGFKRSVNHQPPDAGKQLNSLIEKYDA------------FYLGNTKEKTIYLTFDNGYENYTPKVLDVLKKHRVTGTFFVTGHFVKDQ-------------PQLIKRSDEGHIIGNHSFHHPD--------LTTKTADQIQDELDSVNEEVYKITGKNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKQAHPIYLVSRDNAEALDDAITDKKQG
3	SP3	2c1ga	0.126	0.831	1.564	threading_3	-----FEQKIESLKKEKDDQLSEGNQKEHF-----RQGQAEVIAYYPLQGEKVISRELINQDVKDKLESKDNLVFYYTEQEESGLKGVVNRNVTKQIYDLVAFKIEETEKTSL---------GKVHLTEDGQPFTLDQL------------FSDASKAKEQLIKELTS----FWNFDYKDSQ----IILYEIALPVSAFFDVIQSSY------LLEKDAALYQSYFDKKHQKVVALTFDDGPPATTPQVLETLAKYDIKATFFVLGKNVSGN-------------EDLVKRIKSGHVVGNHSWSHPI--------LSQLSLDEAKKQITDTEDVLTKVGSSSKLMRPPYGAITDDIRN---SLDLSFMWDVDSLDWKSKNEASILTEIQVANGSTVNALPRVIEYKNQG
4	HHPRED-l	2w3z_A	0.178	0.467	3.055	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INPNALKIGSNHNNQAEGYAYSAETVRQMMNN-----QKLVFLTFDDGVDPNTPKILDVLAQQHVHATFFLVGCNITD------------KVKPILQRQTEGHALGIHSFSHVYSLLYP---NRVGNTQQIVSEVTRTQNALKDLGFKTGVWRYPGGHLSWTADKQLAAQGIQWMDW---N-AAVGDAPTSANVVVLMHDITLASLPQIIRYKDR-
5	PROSPECT2	1ecea	0.096	0.836	1.377	threading_5	A------------------------------------GGGYWHTSGR-------EILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKI-----------------VAYAGQIGLRIILDRHRPDCSGQSALWYTSSV--SEATWISDLQALAQGNPTVVGFDLHNEPHDPACWGCGDP-----SIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDYATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTGADSFQWTFWSWNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFD
6	HHPRED-g	2w3z_A	0.171	0.457	3.575	threading_6	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INPNALKIGSNHNNQAEGYAYSAETVRQMMNN-----QKLVFLTFDDGVDPNTPKILDVLAQQHVHATFFLVGCNITD------------KVKPILQRQTEGHALGIHSFSHVYSLLY---PNRVGNTQQIVSEVTRTQNALKDLGFKTGVWRYPGGHLSWTADKQLAAQGIQWM-----DWNAAVGD-AEPLA---TRPTTVASMLAFAKIATNP
7	SPARKS	2c1ga	0.140	0.804	1.366	threading_7	--------------------FEQKIESLK--KEKDDQLSEG-NQKEHFRQGQVIAYYPLQGE---------------------KVISSVRELINQDVKDKLEDNLVFYYTEQEEGLKGVVNRNVTKQIYDLVAFKIEETEKTSLGKVHLFTLDQLFSDASKAKEQLIKELTSFWNFDYKDSQ----IILYEIALPVSAFFDVIQ------SSYLLEKDAALYQSYFDKKHQKVVALTFDDGPPATTPQVLETLAKYDIKATFFVLGKNVSGN-------------EDLVKRIKSGHVVGNHSWSHPI--------LSQLSLDEAKKQITDTEDVLTKVGSSSKLMRPPYGAITDDIRN---SLDLSFIMWDVDSLDWKSKNEASILTEIQHQVANLPRVIEYLKN--QG
8	SAM-T99	2j13A	0.154	0.396	2.775	threading_8	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLLQKNG----------GFYLGDTK--KKDIYLTFDNGYENGYTGILDVLKEKKVPATFFVTGHYIKTQKDL-------------LLRMDEGHIIGNHSWSHPDFT--------AVNDEKLREELTSVTEEIKKTGQKEVKYV---GVFSERTLALTKEMGYYNVFWSLAFLDWIHPGSILL--LHAISKDNAEALAKII------
9	PROSPECT2	1bhga	0.096	0.990	1.361	threading_9	FEEQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGRTRVVLRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSLTDTSKYPKGYFVQNTLYTTPTTDITVTTSVEQDSGLVNKGSNLFKLEVRLLDAENKVVANGTGTVSLWWPYLMHERPAYLYSLEVQLTAQTSLGHEDADIRGKGFDWPLLVKDFNLLRWLGANAFYAEEVMQMCDRYGI----VVIDECPGVGHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVTFVSNSNYAADKYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSYGAETIAEQYHLGLDQKRRKYVVGEMTEQSPTRVLGNKKGIFTRQRQPKAFLLRERYWKIANE
10	SPARKS	2iw0a	0.183	0.401	1.416	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPVGTPIQPGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWANIEAGSN--------PDTIRRMRAGHLVGSHTYAHPD--------LNTLSSADRISQMRQLEEATRRIGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENNKPETT-------HLSAEKFNNELSADVGA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.560 to 2c1gA SCOP code=c.6.2.3	TM-score=0.643 to 1w17A SCOP code=c.6.2.3	TM-score=0.610 to 2c1gA SCOP code=c.6.2.3	TM-score=0.536 to 2cc0A SCOP code=c.6.2.3	TM-score=0.860 to 1eceA SCOP code=c.1.8.3