Template-based Modeling Results for YABP_ECOLI

Submitted Primary Sequence

>Length 216
MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQTFGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSNDILYERPGWNANLGVLPRTVLPRTVLTRTVLTWTVLP
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQTFGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSNDILYERPGWNANLGVLPRTVLPRTVLTRTVLTWTVLP
CEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCEECCCCCCCCCEECCCEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCHHHEEEEEEEEEECC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQTFGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSNDILYERPGWNANLGVLPRTVLPRTVLTRTVLTWTVLP
321212223222230132101210213322211100220020024002121112002000201123222130121020112332321011002001102201321311113020101021114120000000331200001010341322200002301010000010000432142122000221112111110121101210001000101125
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQTFGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSNDILYERPGWNANLGVLPRTVLPRTVLTRTVLTWTVLP
1	MUSTER	2j8kA	0.155	0.778	1.064	threading_1	----VPRG----SHMDVEKLRQLYAAGERD------------FSIV--------------DLRGAVLENINLSGILHGAM--------------LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLE
2	HHPRED-l	3cxb_A	0.217	0.727	1.381	threading_2	----------------------------NT-KEAWWKVLWEKIKDFFFSTGKAKADRCLHEMLFAERAPT--------------RER---LTEIFFELKELACAS----QRDRFQVHNPHENNELLRITQNTDGNLMKDRPDILYPLPSTLCLNPAGAPILSVPLDNIYLYTELRKGHLD------GWKAQETRLHHANIPIEKMVKEVLLAD---
3	HHPRED-g	3cxb_A	0.182	0.736	2.095	threading_3	----------------------------NTK-EAWWKVLWEKIKDFFFSTGKAKADRCLHEMLFAERAPT--------------RE---RLTEIFFELKELACASQRDRFQVHNPHENDQNENELLRITQN-TDTFSCDRPAMIYPLPSTLCLNPAGAPILSVPLDNI----------EGYLYTEDGWKAQTTRLHHANISESTMAMCGLKHTHIP
4	SAM-T99	3du1X	0.136	0.611	3.083	threading_4	----------------------------------------------------------------------DLYRAILREADLTGAKLVKTRLEEANLIKASLCGAN-------------LNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRADLSGASLQGADLSYANLESAILRKANLQGADL-
5	MUSTER	2xtwA	0.105	0.884	1.049	threading_5	MALALVGEKIDRNRFTGEKIETFFNCDFSGAD---LSGT--EFIQFYDRESQKGC-----NFSRAMLKDAIFKSDLSMADFRNSS---------ALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYIT------TNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLD
6	SAM-T99	2j8kA	0.143	0.778	2.838	threading_6	-------------------------GSHMDV----------------------EKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANL-
7	MUSTER	3pssA	0.118	0.861	1.013	threading_7	MIDCFEGVRFEQQDLEGEQFCRFIGCN---SWLDLAERFVDC--SFYDRESEQSC-----LLQGCDLREASFLRDLTMAD--------------CSRSQCLGLELRDCQALGNFSFANQITVSYFCEAHLT------NNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQIN
8	SAM-T99	2o6wA	0.194	0.597	2.776	threading_8	-----------------------------------------------------------------------------------ERECVGCNLEGVNLPRENFG----LKYRIPSPLVTTPFGDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETD
9	SAM-T99	3du1X2	0.162	0.514	2.680	threading_9	-------------------------------------------------------------------------------------------LEEANLIKASLCGAN-------------LNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRADLSGASLQGADLSYANLESAILRKANLQGADL-
10	SAM-T99	3n90A	0.145	0.352	2.311	threading_10	-----------------------------------------------------------------------------------------------------------------------LSGKDFSGQTLIRQDF---------------KTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATM------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.840 to 2j8kA SCOP code=b.80.8.1	TM-score=0.411 to 1tdpA SCOP code=a.29.8.1	TM-score=0.420 to 1aa7A SCOP code=a.95.1.1	TM-score=0.664 to 2bm5A SCOP code=b.80.8.1	TM-score=0.765 to 2j8kA SCOP code=b.80.8.1