Template-based Modeling Results for YAAJ_ECOLI

Submitted Primary Sequence

>Length 476
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
25300210120000000000000000000010110101103200200333233432201001000000012011010000010122201000011000001000110010001010122243120300001000200213000000000000000000000101000200031021211000000000000001311310020020000100000000000000110220030010002100011200010000000200000011100111001000000001022223111220002000100000000000000000011022222120110012003210121010000000000000000000000110000023332200100100000000000002020001000000000000000000000210121022014124332311011221230233222301342344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
1	SPARKS	3gi8c	0.108	0.815	1.718	threading_1	--------------------------------------------------MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-------NAGPIAFIHKAIGDN-IITGALSILLWMSYVISIALFAKGFAGYFLPLINAPIAITEIGIVAFFTALNFFGSKAVGRA----EFFIVLVALLILGLFIFA------------GLITIHPSYVIPDLAPSAV-SGMIFASAIFFLSY-MG----FGVITNASEHIENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEERKVWFKSTEGLYITSALGVLFALLFN----MEGVASITSAVFMVIYLFVILSHYI---LIDEVGGRKEIVIFSFIVVLGVFLLYQWITNRFV
2	PROSPECT2	1b3ua	0.116	0.977	2.037	threading_2	SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED------EVLLALAEQLGTFTTLVGGPEYVH-----CLLPPLESLATVEETVVRDKAVESLRAISHEHSPLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLALAVEACVNIAQLLPQEDLEALVMPTLRQAAEFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVAASHKVKEFCENLSADCRENVIMSQILPCIKELVSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLFFDEKLNSLCMAWLVATSNLKKLVTLFCINVLSEVCGQDITTKHPILDNSTLQSEVKPILEKLTQDQDVDVLSLA
3	PPA-I	3gi9C	0.113	0.746	1.811	threading_3	--------------------------------------------------MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-------NAGPIAFIHKAIGDN-IITGALSILLWMSYVISIALFAKGFAGYFLPLIAPIIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI-----------------TIHPSYVIPDLAPSAVSGMIFASAIFFLSY-----MGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFL-GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAFKSTEGLY---ITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG-------------------------------------GRKE
4	HHPRED-l	3gia_A	0.105	0.782	3.843	threading_4	----------------------------------------------------LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFISGIYALLVAYSYTKLGAKIVS-------NAGPIAFIHKAIGDNIITGALSILLWMSYVI-SIALFAKGFAGYFLPLINANIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITHPSYV--------IPDLAPSA-VS---------GMIFASAIFFLSY---MGFGVITNASE--HIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELI-KASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDVWF-KSTEGLYITLGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEGVLIFEIIYRKVTK-RTFSNNMYVKS-----------------
5	HHPRED-g	3gia_A	0.103	0.775	3.355	threading_5	----------------------------------------------------LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFISGIYALLVAYSYTKLGAKIVS-------NAGPIAFIHKAIGDNIITGALSILLWMSYV-ISIALFAKGFAGYFLPLINANIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITHPSYV--------IPDLAPS----A--VS----GMIFASAIFFLSY-MGFGVIT--NASEHI--ENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPID---ELISENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYFFERKVWF-KSTEGLYITSALG-VLFANMEGVASITSAVFMGRKEIVIFSFIVVATFIGVIFEIIYRKVTK-RTFS---------------NNMYVKS--
6	SP3	3ob6a	0.153	0.824	1.620	threading_6	----------------------------------------------------ADAHKVGLIPVTLMVSGNIMGSG-VFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSP-------GGSYAYARRCFG-PFLGYQTNVLYWLACWIGAIAMVVIGVG-YLSYFFPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA----LIPIVGIAVFGWFWFGETYMA----AWNVS-------GLGTFGAIQSTLNVTLWSF-IGVESASVAAGVVK----NPKRNVPIATIGGVLIAAVCYVLSTTAIM--GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGPIFARVAGTPVAGLIIVGILMTIFQLSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGALNYNRLH
7	SAM-T99	3getA	0.111	0.626	0.545	threading_7	FNEFLNNLSNYEPGKEVIAKEYGVKEVIKLASNENPFGTPPKAIECLRQN--------------------------------------------ANKAHLYPDDSIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAYEIYAKQCG---------------------------------------AKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL----------------------------------------------------------------------------------------PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNL----ALKAAVAADDDEFTEK---TLENNFSQELYKEFAKKHNIKIIDSYTNF
8	SPARKS	3l1la	0.162	0.777	1.458	threading_8	------------------------------------------------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLD----PSPG----GSYAYARRCFG-PFLGYQTNVLYWLACWIG-NIAMVVIGVGYLSYFFPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV---------------------FGWFWFRGE----TYMAAIQSTLNVTLWSF-IGV----ESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP--FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGVAGLIIVGILMTIFQLSSISPNATKEF---GLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVMYALNYNRLKNPYPLDA-------
9	PROSPECT2	1jdha	0.079	0.954	1.991	threading_9	IPELTKLLDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------ETARCTAGTLHNLSHHREGLLAIFKSLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA--------GGLQKMVALLNKTNVKFLAITTDCLQILASKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG-IEALVRTVLRAGDREDITEPAICALRHLEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDT-----QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS
10	PPA-I	3l1lA	0.152	0.718	1.605	threading_10	------------------------------------------------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-------PGGSYAYARRCFG--PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF----------------WFRGETYMAAIQSTLNVTLWSF----------IGV----ESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA--SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLAGLIIVGILMTIFQLPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGH--------------------------------------GHFGKA

Predicted Tertiary Structure


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TM-score=0.664 to 2q6hA SCOP code=f.54.1.1	TM-score=0.664 to 2q6hA SCOP code=f.54.1.1	TM-score=0.804 to 1b3uA SCOP code=a.118.1.2	TM-score=0.614 to 2q6hA SCOP code=f.54.1.1	TM-score=0.613 to 2q6hA SCOP code=f.54.1.1