Template-based Modeling Results for XYLR_ECOLI

Submitted Primary Sequence

>Length 392
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
55333220000020221101100200020023231200000232131102103322010000002133012002403010000102122222123010000102100100030023210110000012322232102200210120024241301112012212311220021012023313321000001111012002002213131122000000122200210021001101200221011002001311222211122112111211122112231222200120020014101420202100310100311013101321321021001011021012113222120220022011211310010014124101320232124224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
1	MUSTER	3hcwA	0.173	0.691	1.477	threading_1	-TNQTYKIGLVLKGSNPFYINVLLGISETCNQHGYGTQTTVSDLMDEVYKMIKQRMVDAFILLYSKEPIKQMLIDESMPFIVIGKPTS--DIDHQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGN--FEVSKDRIQGFETVASQFNLDYQIIETSN-EREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDSYLTEIA-SPPQTCIDIKPRMLGQQAGSAILNILKNDVI--ELVIIDT-ELKIRKSTQREG---------------------------------------------------------------------------------------------------------------
2	SAM-T99	2k9sA	0.272	0.263	2.172	threading_2	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA-------
3	PROSPECT2	3gbgA	0.115	0.663	1.815	threading_3	--KKSFQTNVYRMSKFDT------------------YIFNNL------------YINDYKMFWIDS----------GIAKLIDKNCLVSYEINSSSIILLKKN--------------SIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHN----DIAVLSEVVNGFREIN---YSDEFLKVFFSGFFSKVEKKYNSI------------------------------------------------------------------FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG--V
4	SPARKS	3miza	0.192	0.676	2.646	threading_4	---RSNTFGIITDSTTPYSVDIVRGIQDWANANGKTILIANTGGSEVEIWKFQSHRIDGVLYVTYRRIVDPESGDVSIPTVINCRPQTR----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPI--LLGAELRLDAFRRTTSEFGLTENSISLGDGPVGAENNYVFAAATELKQDDRPTAISGNDEAIQIYIAAA---LGLRIPQDVSIVGFDDFRTVTAL-KPELTTAALPYYDLGREGAKWLNDLIAGEKIYPGSRVVSC-KLVERSSAAF-----------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1jyea	0.129	0.651	1.820	threading_5	L-----LIGVATSLALHAPSQIVAAILSRADQLGASVVVSMVERCKTAVHNLLAQRVSGLIINYPLDAIAVEAACTNVPALFLDVSDQ-----TPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSS--VSARLRLAGWHKYLTRNQIQPIAE---REGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDT------------------------------------------------------------------------------------EDSSCYIPP-------------------------------LTTIKQDFRLLGQTS-------VDRLLQLSQGQAVKGNQLLPVSLVK
6	PPA-I	3c3kB	0.177	0.679	1.707	threading_6	---KTGMLLVMVNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDRSCLTLLSGKMVDGVITMDALSELELQNIIGAFPWVQCAEYD----PLSTVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLA--YQYAQHRESGYLNRLKFHGLDYSRI--SYAENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGVDISQ-ITVPALTTVQQPSEQIGMKAVSLLLEQIHSDVLAKTVHHLLPWKFVRRQSSE------------------------------------------------------------------------------------------------------------------
7	HHPRED-l	2fep_A	0.184	0.679	1.987	threading_7	----TTTVGVIIDISSIFYSELARGIEDIATMYKYNIILSNSDNELHLLNTMLGKQVDGIVFMNITDEHVAEFKRSPVPIVLAASVE----EQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPI-NRSKKLQGYKRALEEANLPFNEQ-FVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRL-SLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIVELP-HRIELRKSTK------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	3egc_A	0.146	0.648	1.698	threading_8	---RSNVVGLIVSIENVFFAEVASGVESEARHKGYSVLLANTAEEREAVGQFFERRVDGLILAPSEHDYLRTELPKTFPIVAVNREL----RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAG--LMTSRERLKGFRAAMSAAGLPVRQ-EWIAA------NGRDGAIKVLTG-DRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDNLPWMAFLD-PPLPVVEQPTRRIGQEAMRMLIHMIEGTGNAT-EMRLQT-RFVTH----------------------------------------------------------------------------------------------------------------------
9	SP3	3miza	0.192	0.676	2.840	threading_9	---RSNTFGIITDSTTPYSVDIVRGIQDWANANGKTILIANTGGSEVEIWKFQSHRIDGVLYVTYRRIVDPESGDVSIPTVINCRPQTR----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPI--LLGAELRLDAFRRTTSEFGLTELSISLGDGPVGAENNYVFAAATELKQDDRPTAISGNDEAIQIYIAAA---LGLRIPQDVSIVGFDDFRTVTAL-KPELTTAALPYYDLGREGAKWLNDLIAGEKIYPGSRVVSC-KLVERSSAAF-----------------------------------------------------------------------------------------------------------------
10	MUSTER	2o20B	0.180	0.679	1.466	threading_10	ASKRTTTVGVILTITSTYFAAITRGVDDIASMYKYNMILANVEKEEKVLETFLSKQVDGIVYMGSDEKIRTSLKNSRTPVVLVGTID----GDKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLK--DVENTERMVGYQEALLEANIEFD--NLVFEGNYSYEQGKALAERLLER--GATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYT-YPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLVLDH-EIFSRRSTK------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.706 to 1bykA SCOP code=c.93.1.1	TM-score=0.468 to 1d5yA SCOP code=a.4.1.8	TM-score=0.712 to 1bykA SCOP code=c.93.1.1	TM-score=0.442 to 1xjaC SCOP code=b.82.4.1	TM-score=0.704 to 1bykA SCOP code=c.93.1.1