Template-based Modeling Results for XERD_ECOLI

Submitted Primary Sequence

>Length 298
MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
5531221022002001122200310020002001100200342212022021300110001134121311100210100120020014231233000120202423340143023210230031122322230001000000100101001001021310113300010003122210000033002003200220132013222220000133233012200121022002303131341000100000000013110002000200210101001001201131023102331334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
1	MUSTER	1a0pA	0.993	0.909	3.719	threading_1	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE-------RLSSARLLSAVRRLFQYLYREKFREDDPSAHL----------KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL--SDLSTTQIYTHVATERLRQLHQ------
2	SPARKS	1a0p_	0.970	0.909	5.673	threading_2	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA-------ERLSSARLLSAVRRLFQYLYREKFREDDPS----------AHLKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLSD--LSTTQIYTHVATERLRQLHQ------
3	PROSPECT2	2a3vA	0.265	0.923	3.747	threading_3	GSQ----FLLSVREFMQTRYYAKKTIEAYLHWITRYIHFH--NKKHPSLMGDKEVEEFLTYLAVQGVATKTQSLALNSLSFLYKEILKTPL---SLEIRFQRSQLERKLPVVLTRDEIRRLLEIVD------PKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKYLFPSFQRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHSGVLSPLS-------RL
4	PPA-I	1a0pA	0.996	0.909	8.245	threading_4	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER-------LSSARLLSAVRRLFQYLYREKFREDDPSAHL----------KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL--SDLSTTQIYTHVATERLRQLHQ------
5	HHPRED-l	1a0p_A	1.000	0.909	6.145	threading_5	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL-------SSARLLSAVRRLFQYLYREKFREDDPSAHL----------KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL--SDLSTTQIYTHVATERLRQLHQ------
6	HHPRED-g	1a0p_A	1.000	0.909	5.434	threading_6	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL-------SSARLLSAVRRLFQYLYREKFREDDPSAHL----------KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL--SDLSTTQIYTHVATERLRQLHQ------
7	SP3	1a0p_	0.967	0.909	5.249	threading_7	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA-------ERLSSARLLSAVRRLFQYLYREKFREDDP----------SAHLKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLSD--LSTTQIYTHVATERLRQLHQ------
8	SAM-T99	1a0pA	0.978	0.909	8.250	threading_8	--QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALL-------AERLSSARLLSAVRRLFQYLYREKFREDDPSAHLKD----------LSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL--SDLSTTQIYTHVATERLRQLHQ------
9	MUSTER	2a3vB	0.268	0.940	2.747	threading_9	MGS--QFLLSVREFMQTR-YYAKKTIEAYLHWITRYIHFHNKKHPS--LMGDKEVEEFLTYLAVQGVATKTQSLALNSLSFLYKEILKTPL---SLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP------KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWGKGGKNRTVTLAKELYPHLKEQIALAKRYYDREFRWHYLFPSMRRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGV---LSPLS
10	SPARKS	1f44a	0.136	0.963	5.455	threading_10	---SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVVDAGERAKQALAFERTDFDQVRSLENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGMLIHIGRGVEKA---LSLGVTKLVERWISVSG---VADDPNNYLFVRKNGSQLSTRALEGIFEATHRLIGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNFIRNLDSETGAMVRLL--ED

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.953 to 1a0pA TM-score=0.998 to native SCOP code=a.60.9.1	TM-score=0.952 to 1a0pA TM-score=0.997 to native SCOP code=a.60.9.1	TM-score=0.848 to 1a0pA TM-score=0.885 to native SCOP code=a.60.9.1	TM-score=0.673 to 1ouqA TM-score=0.523 to native SCOP code=a.60.9.1	TM-score=0.952 to 1a0pA TM-score=0.997 to native SCOP code=a.60.9.1

Experimental Structure

Download 1a0pA

SCOP code=a.60.9.1