Template-based Modeling Results for VIAA_ECOLI

Submitted Primary Sequence

>Length 483
MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQLGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQLGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR
CCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCEEEEECCCCHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQLGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR
543130011001003310022001200001200101230220120012101201430132033241133022101002312112132012102200310241212002202201332222121001100210130012101211222123113201220221121012022112211200020111121213412131013002103312302200330132332422333323232121112223223320200110210130001100201122011100120023201113231322212112222233323333402000001111122121110010000000210233322000000012001020223321310120022214100200100210032033432231100000112134123300220330142231100000002312200130011001011112120133135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQLGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR
1	SPARKS	1yvpa	0.131	0.919	1.965	threading_1	KLGQENAEALLRLIEDGKGCEVVQEIKTQEPTLFALAVCSQCSD------IKTKQAAFRAVPECRIPTHLFTFIQFKKDKEGMKCGMWGRALRKAVSDWYN-TKDALNLAMAVTKYKQRNGWSHKDLLRLEGLTMVAKYVSKGWKEVQEAYKEKELPETEKVLKYLEATERVKELEIIHLIDEYRLVREHLLTIHLKS-KEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVS--SVCERLTN-------------------EKLLKKARIHPFHILVALETYKKGHGLRWIPDTSIVEALDNAFYKSFKLVEPTGKRFLLAIDVSASMNGSILNASVVAAAMCMLVART-EKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQK----TNTAADIFIVFTDCETNVEDVHPATALKQYREKMGAKLIVCAMTSNGDRGMLDICG----FDSGA-LDVIRNFTL
2	PROSPECT2	2nvoA	0.118	0.911	2.246	threading_2	SDESRLTRFLVLASAQKHTVQA----------------TDFVRELVQRDAALALRVTLDVVRGQRAPKADPALLVLALIAKTAPNAADRKAAWDALPEVARTGTMLL-HFLAFADALGGWGRLTRRGVANVYETSQADALRKAHPKTDDAARNAVLKFMVDLRVIEGHLKATEAQTDAAAAALMQEYRLPLEAVPTHVRAEVYRAAMQTNGLTWLLRNLGNLGRVGVLTPNDSA----------------------TVQAVIERLTDPAALKRGRIHPLDALKARLVYAQGQGVRGKGTWLPVPRVVDALEEGNVQPANTRHLLALDVSGSMTCGDVAGPNMAAAAMSLIALRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKRAPKLIVVGLTATEFSIADPQRRDMLDVFDAAAPNVMTAFAR
3	PPA-I	2nvoA	0.129	0.899	1.529	threading_3	VQATDFVRELVQRDAALALRVTLDVVRGKADPALLVLA---LIAKTAPNAADRKAAWDALPEVARTGTMLLHFLAFADALGGWG----RLTRRGVANVYETADVDKLALWAVKYKARDGWSQADALRKADAARNAVLKFMVDG---VLPKVDSPALRVIEGHLKATEAQTDAAAAALMQEYRLLEAVPTHVRG------AEVYRAAMQTNGLTWLLRNLGNLGRVGVLTPNDSAT----------------------VQAVIERLTDPAALKRGRIHPLDALKARLVYA------QGQGVRGKGTWLPVPRFGNVQPANTRHLLALDVSGSMAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQER----LDVDTFVVYTDNETQVHPTVALDQYAQKMG-RAPKLIVVGLTATEFSIADPQRRDMLDVVDAAAPNVMTAFAR
4	HHPRED-l	2nvo_A	0.128	0.826	2.619	threading_4	KHATDFVELVQR-DAALALRVTLVQRAPKADPALLVAKTAPN--------AADRKAAWDALPEVARTGTMLLHFAFADALGGWGRLT----RRGVANVYETA-DVSQADALRKAHP-KTDDAARNAVLK--FM---VDGVLP-------KVDSPAL-RVIEGHLKATEAQ---TDAAQEYRLPLEAVPTHVQTNGLTWLLRNLGLGRVDSTVQAVIERLTDPAALK-----RGRIHPLDALK--------ARLVYAQGGVRGKGLP--VPRV-VDALEEAFT-----LAFGN----------------------VQPANTRHLLALDVSGSMTCDGLTPNMA-AAAMSLIALRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQER-----LDVDFVVYTDNETWAHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIA-DPQRRVVGFDAAAPNVM-TAFA-
5	HHPRED-g	2nvo_A	0.123	0.845	1.898	threading_5	VQATDFVRELVQRDAALALRVTLVQRAPKADPALLVAKTAPN--------AADRKAAWDALPEVATGTMLLHFLAFADALGGWGRLT-R---RGVANVYETADVDLWADALRKAHPK-TDDAARNAVLKDGVLPKVDSPAL-RVIEGHLKATEA--QTDAAAAALMQPLEAVPTHVRG--AEVYRA---AMQTNGLTWLLRLGNLGRVDSTVQAVIERLTDPAA-----LKRGRIHPLDALKARLV--------YAQGGVRGKG-T------WLPALEEAF-----TLAFGN----------------------VQPANTRHLLALDVSGSMTCGDLTPNMAA-AAMSLIALRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLDV----DTFVVYTDNETWAHPTVALDQYAQKM-GRAPKLIVVGLTATEFSIADPDMLDVVGFDAAAP-NVMTAFAR
6	SP3	1yvpa	0.142	0.932	1.890	threading_6	KLGQENAEALLRLIEDGKGCEVVQEIKTQEGRAAQEPTLFALAVCSQCSDIKTKQAAFRAVPECRIPTHLFTFIQFKKDKEGMKCGMWGRALRKAVSDWYNTKD-ALNLAMAVTKYKQRNGWSHKDLLRLEGLTMVAKYVSKGWKEVQEAYKEELSPETEKVLKYLEATERVKRTDELEIIHLIDEYRLVREHLLTIHLKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEV----------------------SSVCERLTEKLLKKARIHPFHILVALETYKKGHGLRWIPDTSIVEALDNAFYKSFKLVEPTGKRFLLAIDVSASMNGSIL-NASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQK----TNTAADIFIVFTDCETNVEDVHPATALKQYREKMGAKLIVCAMTSNGF----SIADDICGFDSGA-LDVIRNFTL
7	SAM-T99	1yvpB1	0.172	0.398	1.890	threading_7	-LGQENAEALLRLIEDGKGCEVVQEIKTFSQEGRAAKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVEPTGRFLLAIDVSASMNQGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQK-------TNADIFIVTDCETNVEDVHPATALKQYREKMGMTSNGFSIADPDDRGMLDICG----FDSGALDVIRNF---
8	SPARKS	2nvoa	0.133	0.905	1.866	threading_8	TVQATDFVRELVQRDAALALRVTLDVVRKADPALLVLA---LIAKTAPN-AADRKAAWDALPEARTGTMLLHFLAFADALGGWG-----RLTRRGVANVYETAD--VDKLALWAVKYKARDG---------W--SQADALRKAHPKTDDAARNAVLKFMVDGVPALRVIEGHLKQTDAAAAALMQEYRLPLEAVPTHVRAEVYRAAMQTNGLTWLLRNLGNLGR-VGVLTPNDSATVQAVIERLTD-------------------PAALKRGRIHPLDALKARLVYAQGQGVRGKGTWLPVPRVVDAFTLAFGNVQPANTRHLLALDVSGSMTGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGPKLIVVGLTATEFSIADPQRRDMLDVVDAAAPNVMTAFAR
9	PROSPECT2	1yvpA	0.122	0.915	2.195	threading_9	MDQMNRLRRFLCFGSEGGNAEALLRLIEDQEIKTFSQEGIKTKQAAFRAVPEFKKDLKEGMKCGMWGRALRKAVSDWYNTKD------ALNLAMAVTKYKQRNGWSHKDLLRLSHIKPANLTMVAKYVSKGWK--------EVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEIIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVS----------------------SVCERLTNEKLLKKARIHPFHILVALETYKKGHGLRWIPDTSIVEALDNAFYKFKLVEPTGKRFLLAIDVSQRVLGSILNAS-VVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQK----TNTAADIFIVFTDCETNVEDVHPATALKQYREKIPAKLIVCAMTSNGFSIADPDDRGMLDIFDSGALDVIRNFDL
10	PPA-I	1yvpB	0.131	0.901	1.456	threading_10	AKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCR--------IPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKD------ALNLAMAVTKYKQRNGW--SHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEIIHLIDEYRLREHLLTIHLKS-----KEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEV----------------------SSVCERLTEKLLKKARIHPFHILVALETYKKGHGNKLRWIPDTSIVEANAFYKSFKLVEPTGKRFLLAIDVSASMNGSILNASVVAAAMCMLVARTE-KDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTN----TAADIFIVFTDCETNVEDVHPATALKQYREKMGAKLIVCAMTSNGFSIADPDDRGMLDICDSGALDVIRNFTL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.664 to 1yvpB SCOP code=a.118.25.1	TM-score=0.774 to 1yvpB SCOP code=a.118.25.1	TM-score=0.658 to 1yvpB SCOP code=a.118.25.1	TM-score=0.679 to 1yvpB SCOP code=a.118.25.1	TM-score=0.514 to 1yvpB SCOP code=a.118.25.1