Template-based Modeling Results for UDP_ECOLI

Submitted Primary Sequence

>Length 253
MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
CCCCCCCCCCCCHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
5542321101012320320100000012310320021034212001124010010203111000000101010000002000201120000000010123313100000010001231111111123112101130010003003322120100000011121113342322224123203100210331001001000000000011221200000000012233322323103200220020002002411
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
1	MUSTER	1u1dA	1.000	1.000	3.364	threading_1	MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
2	SPARKS	3qpba	0.398	0.972	4.920	threading_2	--VGLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPE---RMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLI
3	PROSPECT2	3qpbA	0.398	0.972	4.857	threading_3	VGL--QYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPE---RMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLI
4	PPA-I	1u1dA	1.000	1.000	3.711	threading_4	MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL
5	HHPRED-l	3bje_A	0.240	0.988	3.447	threading_5	GKDGTTLHLKCKSDEL--ADRIIFVGDPGRVDVISGYFDKIRASRDHREIRFATGTYKGTPVTVISTGMGVDNIEIVLNEIHALSTMKIIRLGTCGSPAESVPPLALAVTRHAIGMDNTSLYYSAGTYTSMAHPNITKSICAACDADKQQYVIGTTATASGFYGCQGRRVGRFMKHLTNMVEELGSNGVEVVTNIEMETSAICYLSDMLGYQAGAACVVVSKRVGEKKMLGDQLDAAMKRCIKIILEALVSA-
6	HHPRED-g	3bje_A	0.236	0.988	3.184	threading_6	GKDGTTLHLKCKSDEL--ADRIIFVGDPGRVDVISGYFDDIRASRDHREIRFATGTYKGTPVTVISTGMGVDNIEIVLNEIHALSTMKIIRLGTCGSPAESVPPLALAVTRHAIGMDNTSLYYSAGTYTSMAHPNITKSICAACEADKQQYVIGTTATASGFYGCQGRRVGRFMKHLPNMVEENLSNGVEVVTNIEMETSAICYLSDMLGYQAGAACVVVSKRVGEKKFLGDQLDAAMKRCIKIILEALVSA-
7	SP3	3qpba	0.398	0.972	5.318	threading_7	V--GLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEP---ERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLI
8	SAM-T99	3qpbA	0.396	0.968	4.117	threading_8	---GLQYHLQIRPGD--VGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFY---GQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLI
9	MUSTER	3qpbA	0.398	0.972	3.288	threading_9	V--GLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPE---RMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLI
10	SPARKS	3mb8a	0.324	0.941	4.701	threading_10	MQGEVQPHIRLRKEDV--EPVVIIVGDPARTEEVANMCEKKQELAYNREYRSFRVVYDSQPITVISHGIGCPGTSIAIEELAYLGAKVIIRAGTCGSLKPTLKQGDVCVTYAAVNETGLISNILPEGFPCVATPHVYQALMDAAKELGIEAASGIGVTQDYFYQNGILPSK-------------LEMYSKCCDVIDMEMSGVLGLCQARGIATCGILAVDGSPLQWDEATGVKATTGKENMVKITLKACANLR

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.999 to 1u1dA TM-score=0.928 to native SCOP code=c.56.2.1	TM-score=0.999 to 1u1dA TM-score=0.928 to native SCOP code=c.56.2.1	TM-score=0.917 to 1u1dA TM-score=0.903 to native SCOP code=c.56.2.1	TM-score=0.919 to 1u1dA TM-score=0.901 to native SCOP code=c.56.2.1	TM-score=0.999 to 1u1dA TM-score=0.928 to native SCOP code=c.56.2.1

Experimental Structure

Download 1k3fA

SCOP code=c.56.2.1