Template-based Modeling Results for UBID_ECOLI


  Submitted Primary Sequence

>Length 497
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEECCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
45322131022002103532202102230121110020022024221200002103112120000000012100200233322103200200121322322310320021011013113121221232302120122331103200001012321110000000002114443100000000010422000100113101100111111333330200000001000000000101321000100010222301002021130301020100010001123223211212111112312200001021000232000000011312210000000002000200233013001010023100000000002231221021001001001221210100000132020410310010002202222000002301012012112221210100010014132323332142143133002101300330102432434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
1MUSTER2idbA0.9630.9323.627threading_1-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVW---SFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLG-SKGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
2SPARKS2idba0.9830.9324.158threading_2-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGV--WSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
3PROSPECT22idbA0.9720.9325.842threading_3-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA--GGQEDVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPIT-CWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVG---VWSFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
4PPA-I2idbA0.9570.9327.614threading_4-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQEDVSA--LREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVW---SFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
5HHPRED-l2idb_A1.0000.9305.392threading_5-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA-G--QEDVSALREVGKLLAFLKEPEPPKGFRDL-------------PTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRV--GVWSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
6HHPRED-g2idb_A1.0000.9300.349threading_6-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA-G--QEDVSALREVGKLLAFLKEPEPPKGFRDL-------------PTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRV--GVWSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
7SP32idba0.9850.9321.995threading_7-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFRD-------------LPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGV--WSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
8SAM-T992idbA0.9720.93010.049threading_8-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAG--GQEDVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKL-IRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVWSFLR---QFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAI-------
9MUSTER2idbA10.9810.6362.475threading_9-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEV--------------------------------------------------------------------------------------------------------------------------------------------------------------
10SPARKS2ek8a0.1050.7650.567threading_10--------------------------------------------------------------------ADHQITKRT---DAENMYNTIQFLS--QAPRVAPEELKAVRYIEQQFKSYGYHVEVQPYTAPSEVTLKTEKKEGEAFTYSPNSD------VTAELVYVGLGTTAD----VAGKDLNGK----IALIQRGNISFADKVRNAAKQG--AKAVIIYNNTDGKLNGTLGGSDASFEGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANK------------KNTNDIIIIGS----------HHDSVEKAPGANDDASGVAVTLELARVMSKLKTDLRFITFGAEENGLIGSKKYAASLSEDEIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGV--LPYGQEGRSDH----ESFHALGIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGSAQAARPGELV

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.933 to 2idbA
TM-score=0.966 to native
SCOP code=b.45.1.3		 TM-score=0.936 to 2idbA
TM-score=0.969 to native
SCOP code=b.45.1.3		 TM-score=0.933 to 2idbA
TM-score=0.966 to native
SCOP code=b.45.1.3		 TM-score=0.934 to 2idbA
TM-score=0.967 to native
SCOP code=b.45.1.3		 TM-score=0.933 to 2idbA
TM-score=0.966 to native
SCOP code=b.45.1.3

  Experimental Structure

Download 2idbA
SCOP code=b.45.1.3